GgaINT0020311 @ galGal4
Intron Retention
Gene
ENSGALG00000006867 | QRICH1
Description
glutamine-rich 1 [Source:HGNC Symbol;Acc:HGNC:24713]
Coordinates
chr12:11606218-11606807:+
Coord C1 exon
chr12:11606218-11606326
Coord A exon
chr12:11606327-11606655
Coord C2 exon
chr12:11606656-11606807
Length
329 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GTATTCTCTTTCCTGATCAGATA
3' ss Score
8.91
Exon sequences
Seq C1 exon
GTTATGTCCTCTCCAGTCACGTAACGGAGGAGATGCTGTGGGAGTGTAAGCAGCTGGGAGCTCACTCCCCTTCCACCTTGCTCACTACGCTGATGTTTTTTAATACAAA
Seq A exon
GTAAGTACTTGTGCCTGTGAGACTTTTGCAGCATAAAAACTTCACTGTCAGGGTTGTTAGGAAACTGCTGCACTGGATTAAGGCACTGTCGTGAATTTTGAATGGTTGCAGACAGAGCCCTCTTGCAACCCCATCAGGCAAAGAAATGCAGTGCAACAAGGAAAGAGCTAGCAGAGGGGAAACTAAACTTCTGCCTGTTGCGTGCTTTGCTGGAATAGTCTTTAACTCAGTGTTGATTTGAGCTTCAACTGGCTCTTGATGAGTAAAGATAACTGCGTTACTGTAGAGGCTGTATCCTCTGAGTATCCTGTATTCTCTTTCCTGATCAG
Seq C2 exon
ATACTTCCTGTTGAAGACAGTAGACCAGCACATGAAGCTGGCCTTCTCCAAGGTATTGAGGCAGACCAAGAAGAACCCTTCCAATCCCAAGGATAAAAGCACGAGTATCCGCTATCTGAAGGCTCATGGTGCACACCAGACAGGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006867:ENSGALT00000011121:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.295
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(21.8=97.3)
A:
NA
C2:
PF120123=DUF3504=FE(30.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCAGTCACGTAACGGA
R:
CTTTCTGGCCTGTCTGGTGTG
Band lengths:
254-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]