MmuINT0130170 @ mm10
Intron Retention
Gene
ENSMUSG00000006673 | Qrich1
Description
glutamine-rich 1 [Source:MGI Symbol;Acc:MGI:1916482]
Coordinates
chr9:108555962-108556559:+
Coord C1 exon
chr9:108555962-108556070
Coord A exon
chr9:108556071-108556407
Coord C2 exon
chr9:108556408-108556559
Length
337 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TGCTTGTACTTGTGGTCCAGGTA
3' ss Score
6.13
Exon sequences
Seq C1 exon
GCTATGTGTTGCCCAGTCACGTGACTGAAGAGATGCTGTGGGAATGTAAGCAGCTTGGGGCACATTCCCCTTCCACACTGCTGACCACCCTCATGTTCTTTAACACCAA
Seq A exon
GTAAGTACTCTAGGAGCTACTACTAGCAGCTACCCAGTGACGACTGGGAAAACCAGGAGGACTTTTGTATTCCTCTGATACAATTGAGAAATTTTTGAAGTAGTTTGAGTTCCAGTCGGCTGCGTTTGTGTGTGGTCAGTGGTAAGGGACAAACAGCCTTGCCACACCCCCTTCAGTCTGTGTTGATAGGGTTCTTTCTCTGGACAGTATGCTTGGACATGGCCCTACCTAGATCCTGGGAGTGGGGATGGTTCATCTCAGTCACTGATGGGCAGAAAGTAAATTATCATATCCTCCTGGCATCCCTCTCTTTGCCTTGCTTGTACTTGTGGTCCAG
Seq C2 exon
GTACTTCCTGTTGAAGACTGTAGATCAGCACATGAAGCTGGCTTTCTCTAAGGTCCTCCGACAGACAAAGAAGAGCCCCTCGAATCCTAAGGATAAAAGCACGAGCATCCGCTACCTGAAGGCCCTCGGAATACACCAGACTGGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006673:ENSMUST00000112155:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(21.8=97.3)
A:
NA
C2:
PF120123=DUF3504=FE(30.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTGTTGCCCAGTCACGTG
R:
CTGGCCAGTCTGGTGTATTCC
Band lengths:
255-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types