RnoINT0121235 @ rn6
Intron Retention
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117343254-117343841:+
Coord C1 exon
chr8:117343254-117343362
Coord A exon
chr8:117343363-117343689
Coord C2 exon
chr8:117343690-117343841
Length
327 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GCCTTGTACTTGTGGTCCAGGTA
3' ss Score
6.78
Exon sequences
Seq C1 exon
GCTATGTTCTGCCCAGCCACGTGACTGAAGAGATGCTGTGGGAATGCAAGCAGCTTGGGGCACATTCCCCTTCGACACTGCTGACCACCCTCATGTTCTTCAACACCAA
Seq A exon
GTAAGTACTCTAGGAGCTACTACAGTAAAGACGGGCAAACCCAGGAGGACTTCTGCATTCCTCTGATACATTTGAGAAATGTTGAGCTAGTTTGAGTTCCAGTTGGCCACATTTGTGTGTGGTGAATGGTAAAGTGCAAACAGCCTTGCCAGACCCCCTTCAATCTATATTGATATGGTTCTTTCTCTGGACAATGTGCTTGAGCATGGCCCTACCTAGATCCCGGGAATGAGGAGTGGTTCATTCTGAGTCACTGATGGGCAGACGGTGAGTTATCGTCTCCTCCTGGCCTCCCTCTCTTTTCCTTGCCTTGTACTTGTGGTCCAG
Seq C2 exon
GTACTTTCTGTTGAAGACAGTAGATCAGCACATGAAGCTGGCGTTCTCCAAGGTCCTCCGGCAGACAAAGAAGAGCCCCTCGAATCCTAAGGATAAAAGCACTAGTATCCGCTACCTGAAGGCCCTCGGAATACATCAGACTGGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071:ENSRNOT00000064571:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(40.0=97.3)
A:
NA
C2:
PF120123=DUF3504=FE(56.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGTTCTGCCCAGCCACG
R:
TGGCCAGTCTGATGTATTCCG
Band lengths:
255-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]