HsaINT0135761 @ hg19
Intron Retention
Gene
ENSG00000198218 | QRICH1
Description
glutamine-rich 1 [Source:HGNC Symbol;Acc:24713]
Coordinates
chr3:49070055-49070661:-
Coord C1 exon
chr3:49070553-49070661
Coord A exon
chr3:49070207-49070552
Coord C2 exon
chr3:49070055-49070206
Length
346 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GCATTTTACTTGTGATCCAGGTA
3' ss Score
6.63
Exon sequences
Seq C1 exon
GCTATGTCTTGCCCAGCCACGTGACTGAGGAGATGCTATGGGAGTGCAAGCAGCTTGGGGCTCACTCCCCCTCCACCTTGCTGACCACCCTCATGTTCTTTAATACCAA
Seq A exon
GTAAGTGTTCTAGAGGCTCCACTGCTGGCATCTGTCCAGTGAAGAGTGTGGAAGCTATCCAAGAGGCCTTCTGAATTCCTCTGACATATATTTGAGAAACTGGGCTACTGAAAGCCCTAACCCCACTTGGCTGCATTTTATTTGGTAACCAGTGAGGCAAACACCCTTGCCAGACCCCTACCATCCATCTTGATGTGGTTCCTGCACTGGACACTGCTTGGGTACGGGCCTGCCCAGATCTTGGGAATGTGGGCAGTGGCTCCTCTGAAGCACCAGTGGGCAGAGGATGAGTCATGGTATCCTCCCGGCACCCCTCCCTCTGCCTTGCATTTTACTTGTGATCCAG
Seq C2 exon
GTACTTCCTATTGAAGACAGTGGACCAGCACATGAAGCTGGCCTTCTCCAAGGTCTTGCGACAGACAAAGAAGAACCCCTCTAATCCCAAGGATAAAAGCACGAGTATCCGGTACTTGAAGGCCCTTGGAATACACCAGACTGGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198218-QRICH1:NM_017730:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(21.8=97.3)
A:
NA
C2:
PF120123=DUF3504=FE(30.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGTCTTGCCCAGCCACG
R:
TGGCCAGTCTGGTGTATTCCA
Band lengths:
255-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)