BtaINT0121052 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014191 | QSOX1
Description
quiescin Q6 sulfhydryl oxidase 1 [Source:HGNC Symbol;Acc:HGNC:9756]
Coordinates
chr16:62828362-62830310:+
Coord C1 exon
chr16:62828362-62828507
Coord A exon
chr16:62828508-62830175
Coord C2 exon
chr16:62830176-62830310
Length
1668 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
GTGATTCCCTTCCCTCACAGGCT
3' ss Score
10.23
Exon sequences
Seq C1 exon
GTGACATTGGACCTGTCGCAGCACCAGGGCATAGCAGTGCGCAGGGTCCTGAACACAGAGCGTGACGTGGTGAACAGGTTTGGTGTCACCAACTTCCCGTCTTGCTACCTGCTGTCTCGGAATGGCTCCTTCTCCCGGGTCCCCGC
Seq A exon
GTGAGTGTCTCTCCACCCCTCTCCCCTATCCATTCCTGTGTTTCTCCTTTCTTCCTGCCTGGAGAGGCCGCCAGCCTTTCACAGGGGCTGATGAGTTCTTTGCCTTGCAAGTCTCCTGAGGAGTCCCTGGGCAAGCAGGGAGCACCCTCTGCAGGAGGAGCAGATGTCTGCCTACGGCAGGGTCGGGGAGTCTACAGCCTGAAGTCAGGGCCCAGGATGCTGCACACGCACTTCCGCCCCCCAGCTCAGCAGTCCAGGCCCAGGTCCCTGGCACACTCAGCACCCAGCCAGTGCCAGTGCTTCTGCACCAACCCCACTGCAGCCCTGGCCCTATTCCCCACCCTCCTCTCTTCACAGACAGACTCCTTGGCAGGCTGCGGGCCTGGCAAGCACTCAGCTATGCCTGACCCTCCCTCCCTTTGGTTTTCTAATTGCAGAAAAGTTCATTAGGAGCCAGACAATAGCCAGTTCCAAAATGCCAAGAGAAAACAATCAGGCCAGCCGCAGCCCCTCTGTCAGGCTCCCGCTGCTGAATGGCCCATTAAATGGCGCCAGATGGTGCCTTGGTGCCCTCCTCAGGCAGATGATTGATGTCCGCCCGGCCCCACAGGCAGGGGCCCAAGGGCCAGGGAGACCGCAGCCGGCCCAAGATGCCCAGTGAGCCGCTTCTTGGGGCCGTCAGTGCCATCCCGCTCCGGGGCCGGGCAGTGTGGCCCCTGGTCCTCCCGGCCACCCGGCAGCATGGGGCCAGGGCTCAGCAGGAGCACAGCCTGGGAGGAGGCAGGATGGCAGTGGGGACAGGGAGGGGCAGGACGTGCCAGTCCTGGTGGGAGCGGAGGCATTGTTTCCGCTCTTGGAGTTGGTGAAGGGGAAAATGGTTTGTGACGATGCTGCTTCCGCGCCATCTGCTCATTGATCGACATCAGTCTGGGACAGTGGAGTGGAAAGCAATGTTTCTTGATGCCGGCTCCCCGGGGTGTCCCGTCACACTGCTGGGCTTCACGTCCTTCCCTCCAGTGGCCCCGTCTAGGAGGCATCGCCTGCCCCTGAGGACTCCTCTTTATGAGAAGACAGGGAGATCAAAAGGATTGGAAGAGACTTGAGAATTTTAGTGGTTTGGGGGGTTGTGGCTGTGATTTTTTTTTCAGTCAGGTATCAAACTTCCGTTGACCTCCCTGGGGCGTGATGTCGCCTCTGGTACCTTGGAGCCAGCTTGTGTACTTCCTTGAGGCCACACACGCCACTTTGTATCTTTGGTCTCTGGGGAGGATCATCAGACCCACAGTCCAGTCTGCAGCCAGAAGTAGCACTCTCCCCAGGAGACCCACCTGCTCCCGAAAGTGCCCTGTGCCCTGCTCCCCCCGCCCCACCTCTCTGGGGCAGGTCGAGGAATTCACAGGCCCAGCCTCTTTCCCAGGTGGGATTTTGATTTCAGGCTGGTGTTAAACAGACTTGGCACAGCATGGCCAGTGAATAGAAAGGTTAACATGAGGCAGGGGTGCCTCGCTTTTGACCTCACTGAGGATAAGATCAAACCAAGTTCAAATATTTCTTGATAAACATTTTCGTCAGGGGACCCACCAGCCTTCTCTCTTTGTCATGAGTTAGCTCTGGGGTTTCACTCCTTCGAGCTCACTGCCTCTCCCCGGTGATTCCCTTCCCTCACAG
Seq C2 exon
GCTTACAGAATCCAGATCTTTCTACACCACTTACCTGCGGAAGTTTTCTGGGAGCACCAGGGGGGCTGTCCAGACCACAGCTGCGCCAGCTACCACCAGCGCGGTGGCTCCCACCGTGTGGAAAGTTGCAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014191:ENSBTAT00000018869:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTGGACCTGTCGCAG
R:
ATCTGCAACTTTCCACACGGT
Band lengths:
278-1946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development