RnoINT0121278 @ rn6
Intron Retention
Gene
ENSRNOG00000003649 | Qsox1
Description
quiescin sulfhydryl oxidase 1 [Source:RGD Symbol;Acc:68957]
Coordinates
chr13:73435746-73437585:-
Coord C1 exon
chr13:73437440-73437585
Coord A exon
chr13:73435881-73437439
Coord C2 exon
chr13:73435746-73435880
Length
1559 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TCCATTTGCTCTCTTTCCAGGCT
3' ss Score
9.94
Exon sequences
Seq C1 exon
GTAACTCTGGACCTGTCCCAGTTCCATGCTGTGGCAGTGCGCAGGGTCTTGAATTCAGAGAGCGACGTGGTGAGCAAGTTTGCTGTCACTGACTTTCCATCTTGCTACCTGCTGCTTCGGAATGGTTCTGTTTCCCGAGTGCCTGT
Seq A exon
GTGAGTGTGATAGCCCCATCGTCTCCTCCCTGCCCGGTCACTCTTCTGCCAGAGAGGTTACTAGAAAGAGCAGCCAAGTAGGAGAAGCAGATGTCTGATCCTCTGCGTGAGACAAGACCTCCAACATTGTAGCTCAGGACTCCTGCTGCCTCGGCCCTGAGCACCACCCATCCACACCATGGCCTGGCCATGTTATCCCACACCTCTGCACAGAGGTGTCTGCCTGGCGAGGACTCAGATGTGCTGGACCTTCCCTCCCTTTGCTTTTCTAATTGCAGAAAAGATCATTAGGAGCCAGACAATAGTCTGCTCCAAAATGTCAGGAGGAAACAATGAAGCCCTCAGCTGCTGTCAGCCTCCTGCTGCTGAAAGGCCTGTTAAATAGCACCAGATGGTGCCTCGGTGCCCTCCTCGGCAGATGATTGATGTCAGCCTGGCCCTGCAGGCAGAAATTTGGGGGGCCAAGGAAATCAAGGCTACCCTAGGTACCCAGAAGACCCAGAAGTTGTTCCTTGGGGTCTTTAGTGCCACCCTACACTGAGGCTGGGCCAGGCAGCCCCTGCCCTTTCCCTGTCCAGGGCCACCAGGTGTCCCTGAAGCAGGCCTGCCAGAGCCAAGAAGCTCACAAGGGGCCTGGGAGGCTCGATTCCGGGCAGGCCCAGAGGATGACGGTCCTAGAGGCAAGGAGAGCCATTGCTCCTTCACTTGGAGTTGGTGGAGGAGAAAATTGTTTGTGACGATACTGCCCCTGAGCCATCTGCTCGTTGATAGATACTGAGCCGGGATGGCAGAGCAGGAAAACCATGCTTCCTGATGCTGGCTCCCGTGGGACATCCTGTCACGGATGCTTATCTTGGCCAGACCTTTTAGAGGAGATACTTTCTGTCTTTAAGACTCCTGTATTAGGGAAGAGAAATCAGGAGCATTTGGACAAACATGGCTCTCTGTTGTTGTTAAGTCTAAAATTACACATCATTTCTTTGACTTCCATGAGGAGTAATGTCAGCTTGTGATGTCACCTGCTGATGTTACCTTGTGATGTCTTGGAACAAGATTGTGGGAGGGTGGCTGCCTTGAGACCAATCACACCCAGCCATTCCTATCTTGGGCAGAAGTTAGTGGGTTTTGTTCTGTTGTTTTTCTTTGTGGTGCTAGGGACCAAACCCAGGACTTGTACAGCCAGGTAGGAGCTCTCCTGCTGAACTGCATCCCCAGTTCTCTGTAGCAAAATGGGTGGTGTTCCCAGTGGGCCTACCTGCCTCGGTCTCTGTAGACCATGCCTTGCCTGGAGCCAGAAGGCACACTGAGTAATCCTCAGGCCCAGTTATTTTTGCAGATAGGGGTTCTGTATCTGCCTGGTGGAAAAGAGGATTTCTATAGCATGAACCATGAATAGACAGGTCAAAGTGAGGCCTAGGGAGCCAAAGACAAGATGGGACCAAGTTTAAATGTCTCACTAAGCCTTTCTGTAGGAGGAGCCACCTATTTCCTCTCCTGACAGTGCTCAGCTATGTGATTTTTGTCTTTGTCCTTAGCACTTCCATTTGCTCTCTTTCCAG
Seq C2 exon
GCTGGTAGAGTCCAGGCCTTTCTATACATCCTACCTGCGGGGGCTCCCTGGACTGACCAGGGAGGCTCCCCCAACCACAGCTGCACCAGTCACTCCTGATAAGATAGCACCCACAGTGTGGAAGTTTGCAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003649:ENSRNOT00000005052:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTGTCCCAGTTCCATG
R:
CGGTCTGCAAACTTCCACACT
Band lengths:
274-1833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]