MmuINT0130215 @ mm9
Intron Retention
Gene
ENSMUSG00000033684 | Qsox1
Description
quiescin Q6 sulfhydryl oxidase 1 [Source:MGI Symbol;Acc:MGI:1330818]
Coordinates
chr1:157636428-157638256:-
Coord C1 exon
chr1:157638111-157638256
Coord A exon
chr1:157636563-157638110
Coord C2 exon
chr1:157636428-157636562
Length
1548 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TCCATTTTCTTTCTTTACAGGCT
3' ss Score
11.3
Exon sequences
Seq C1 exon
GTAACTCTGGACCTGTCCCAGTACCATGCTGTGGCAGTGCGCAGGGTCTTGAATACAGAGAGTGACCTGGTGAACAAGTTTGGCGTCACTGACTTCCCATCTTGTTACCTGCTGCTTCGGAATGGCTCTGTCTCCCGAGTGCCTGT
Seq A exon
GTGAGTGTGACGTCCCTGCCCAGTCACTCTTCCTGCCAGAGAGGTCACTAGAAAGAGCAGGCAGGTAGGAGAAGCAGATGTGTGAGTCAAGACCTCCGACCTTGCAGCTCAGGATTCCTGCCTCGGCCGGCCCTGAGCTCCGAAGCCATCTACACCATGCCATGACCATGTTATCCCACACCTCTGTGCACAGAGCCATGTGTTGGTGGGGTGCTGGCCTGGCGAGGACTCAGATGTGCTGGACCTTCCCTCCCTCTGCTTTTCTAATTGCAGAAAAGTTCATTAGGAGCCAGACAATAGTCTGCTCCAAAATGTCAGGAGAAAACAATGAAGCAGCCTCAGCTGCTGTCAGCGGCCTGCTGCTGAATGGCCTGTTAAATGGCACCAGCTGGTGCCTTGGTACCCTCCCTCCCTCCTCAGGCAGATGATTGATGTCAGCCTGGCCCTGCTGGCAGAAATTTGGGGGGCCAAGGAAATCGAGGCTACCGTAGGTACCCAGAAATCTACTTCTTGGGGCTGTTAGTACCGCCCTACACTGAGGCTGGGCTAGGCAGCCCCCTCGCCCTTTCCCTGTCCTGGTCCACCAGTGCTCCTGAGGCCGGCCAGCCAGAGTCAGGAAACATGATGTTCACAAGGCCTGGAAGGCAAGACCCCAGGCAAGCCCAGAGAGTGCCAGTCCTAGAGAAAGAAGAGGCATTGTTTCCCTGGCTTGGAGTTGCTGGAGGGGAAAATTGTTTGTGACGATGCTGCTCCTGAGCCATCTGCTCACTGATAGACACTGAGCCCGGATGGCAGAGCAGGGAAACCATGCTTCCTGACGCTGGCTCCCATGGGACGTCCTGTCACTGATGCTTATCTTGGCTAGACCTTTTGGAGGAGATAGCTCCTGCCTTCAAGACTCCTGTATTAGGAAAGAGAAATCAGGAGTGTTTGGGCAAACCTGGTTCTCTGTTGTTATTATGTCTAAAATCATACATCAGCTCTTTGACTTCCATGGGAAGTAATGTCAACTTGTGATGTCACCTGCTGATGTTACCTTGTGATGTCTTGGAACAAGCTTGTGGGAGGGTGGCTGTCTTGAGACCAGTCACACCCAGCCATTCCTGTCATGGGCAGAAGCTGGTGGTCTTTGTTTGGTTGTTTTTCTCTGTGGTGCTGGGGACCCTGGGCTTGCACAGCTAGGTAGCAGCTCTTTTGAATGCATCCCCAGTTCTCTGTAGCAAAATGGATGGTGTTCCCAGTGGCTACCTGCCTCAGTCTCTGTAGACCGTGGCCTTGCCTGGAGCCAGAAGGCACACTGAGTAATTCTCAGGCCCAGTTGTTTTTCCAGATAGGGGTTCCGTATCTGGTGGAAAAGAGGGTTTCTATACCATGGACAGTGAATGGACAAGTGAGGCCCAAGGAGCCAAAGACAAGATGAGACCAACTTGAAATGTTTCTTACGGCACCTTTCTGTGGGAGGAGCCACCTATTTCCCCTGCTGACATTGGTTAGCTATGTGATTTTTTTTTTCTTTGTCCTTAGCACTTCCATTTTCTTTCTTTACAG
Seq C2 exon
GCTGGTGGAGTCCAGGTCTTTCTATACATCCTATCTTCGGGGGCTACCTGGACTGACCAGGGATGCTCCCCCAACCACAGCCACCCCAGTCACTGCTGATAAGATAGCACCCACAGTGTGGAAGTTTGCAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033684-Qsox1:NM_023268:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTCCCAGTACCATGCT
R:
CGGTCTGCAAACTTCCACACT
Band lengths:
272-1820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: