GgaINT0037242 @ galGal3
Intron Retention
Gene
ENSGALG00000003933 | QSOX1
Description
NA
Coordinates
chr8:6290262-6290627:-
Coord C1 exon
chr8:6290482-6290627
Coord A exon
chr8:6290397-6290481
Coord C2 exon
chr8:6290262-6290396
Length
85 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
CACTGCTCCTCCGTCTGCAGGCA
3' ss Score
9.71
Exon sequences
Seq C1 exon
GTAGCCCTGGACCTGCTGCAGTACGAGAACGTGGCGGTGAGGAGGGTGCTGAGCAGCGAGGAGGAGCTGGTGGAGAAGTTTGGTGTCACCACCTTCCCCTCCGCCTACCTGCTGCTCCGCAACGGCTCCTTCTCCCGCCTGCCCGT
Seq A exon
GTGAGTCGGGGGCGCGGGCGGGGAGCACCGGGGGGCTTCTTGGTGTGGGGTGGGAGGGGGCTGCTCACTGCTCCTCCGTCTGCAG
Seq C2 exon
GCACGCCGAGGCACGCTCCTTCTACACCTATTACCTGCAGACGCTCTCTGGTGTCACCCGTGGCTCCTACAGGCTGAACGTCACCGGCAGCGCCATCAATGAGACCCGCGCGCTGCAGCCGGCGCAGGCGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003933:ENSGALT00000006266:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGCTGCAGTACGAGAAC
R:
TAGGTGTAGAAGGAGCGTGCC
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]