MmuINT0130215 @ mm10
Intron Retention
Gene
ENSMUSG00000033684 | Qsox1
Description
quiescin Q6 sulfhydryl oxidase 1 [Source:MGI Symbol;Acc:MGI:1330818]
Coordinates
chr1:155789298-155791126:-
Coord C1 exon
chr1:155790981-155791126
Coord A exon
chr1:155789433-155790980
Coord C2 exon
chr1:155789298-155789432
Length
1548 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TCCATTTTCTTTCTTTACAGGCT
3' ss Score
11.3
Exon sequences
Seq C1 exon
GTAACTCTGGACCTGTCCCAGTACCATGCTGTGGCAGTGCGCAGGGTCTTGAATACAGAGAGTGACCTGGTGAACAAGTTTGGCGTCACTGACTTCCCATCTTGTTACCTGCTGCTTCGGAATGGCTCTGTCTCCCGAGTGCCTGT
Seq A exon
GTGAGTGTGACGTCCCTGCCCAGTCACTCTTCCTGCCAGAGAGGTCACTAGAAAGAGCAGGCAGGTAGGAGAAGCAGATGTGTGAGTCAAGACCTCCGACCTTGCAGCTCAGGATTCCTGCCTCGGCCGGCCCTGAGCTCCGAAGCCATCTACACCATGCCATGACCATGTTATCCCACACCTCTGTGCACAGAGCCATGTGTTGGTGGGGTGCTGGCCTGGCGAGGACTCAGATGTGCTGGACCTTCCCTCCCTCTGCTTTTCTAATTGCAGAAAAGTTCATTAGGAGCCAGACAATAGTCTGCTCCAAAATGTCAGGAGAAAACAATGAAGCAGCCTCAGCTGCTGTCAGCGGCCTGCTGCTGAATGGCCTGTTAAATGGCACCAGCTGGTGCCTTGGTACCCTCCCTCCCTCCTCAGGCAGATGATTGATGTCAGCCTGGCCCTGCTGGCAGAAATTTGGGGGGCCAAGGAAATCGAGGCTACCGTAGGTACCCAGAAATCTACTTCTTGGGGCTGTTAGTACCGCCCTACACTGAGGCTGGGCTAGGCAGCCCCCTCGCCCTTTCCCTGTCCTGGTCCACCAGTGCTCCTGAGGCCGGCCAGCCAGAGTCAGGAAACATGATGTTCACAAGGCCTGGAAGGCAAGACCCCAGGCAAGCCCAGAGAGTGCCAGTCCTAGAGAAAGAAGAGGCATTGTTTCCCTGGCTTGGAGTTGCTGGAGGGGAAAATTGTTTGTGACGATGCTGCTCCTGAGCCATCTGCTCACTGATAGACACTGAGCCCGGATGGCAGAGCAGGGAAACCATGCTTCCTGACGCTGGCTCCCATGGGACGTCCTGTCACTGATGCTTATCTTGGCTAGACCTTTTGGAGGAGATAGCTCCTGCCTTCAAGACTCCTGTATTAGGAAAGAGAAATCAGGAGTGTTTGGGCAAACCTGGTTCTCTGTTGTTATTATGTCTAAAATCATACATCAGCTCTTTGACTTCCATGGGAAGTAATGTCAACTTGTGATGTCACCTGCTGATGTTACCTTGTGATGTCTTGGAACAAGCTTGTGGGAGGGTGGCTGTCTTGAGACCAGTCACACCCAGCCATTCCTGTCATGGGCAGAAGCTGGTGGTCTTTGTTTGGTTGTTTTTCTCTGTGGTGCTGGGGACCCTGGGCTTGCACAGCTAGGTAGCAGCTCTTTTGAATGCATCCCCAGTTCTCTGTAGCAAAATGGATGGTGTTCCCAGTGGCTACCTGCCTCAGTCTCTGTAGACCGTGGCCTTGCCTGGAGCCAGAAGGCACACTGAGTAATTCTCAGGCCCAGTTGTTTTTCCAGATAGGGGTTCCGTATCTGGTGGAAAAGAGGGTTTCTATACCATGGACAGTGAATGGACAAGTGAGGCCCAAGGAGCCAAAGACAAGATGAGACCAACTTGAAATGTTTCTTACGGCACCTTTCTGTGGGAGGAGCCACCTATTTCCCCTGCTGACATTGGTTAGCTATGTGATTTTTTTTTTCTTTGTCCTTAGCACTTCCATTTTCTTTCTTTACAG
Seq C2 exon
GCTGGTGGAGTCCAGGTCTTTCTATACATCCTATCTTCGGGGGCTACCTGGACTGACCAGGGATGCTCCCCCAACCACAGCCACCCCAGTCACTGCTGATAAGATAGCACCCACAGTGTGGAAGTTTGCAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033684:ENSMUST00000035325:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTCCCAGTACCATGCT
R:
CGGTCTGCAAACTTCCACACT
Band lengths:
272-1820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types