BtaINT0121657 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012784 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr5:30058501-30059413:+
Coord C1 exon
chr5:30058501-30058609
Coord A exon
chr5:30058610-30059206
Coord C2 exon
chr5:30059207-30059413
Length
597 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTCATTTTCTTTTTCTTTAGATT
3' ss Score
10.83
Exon sequences
Seq C1 exon
TGAGTTTACTGGGGCCTGTGACCACTCCTGAGCATCAGCTCCTCAAGACTCCTTCATCCAGTTCCCTGTCGCAGAGAGTCCGCTCCACCCTCACCAGGAACACTCCCAG
Seq A exon
GTATGTAGAATTGGTTGGCTCAGGAAATAGGAAATGGTCACTTCCTTGGACATCCTTCCCATCATGCTGAAGCTTATTGAAAGAAAAATTGAATTAGATCTTAGCTAGCAGCTCGATGTTAAAAGCTGTAAGGATACCCTTTTTGAAAGGGTCTAAAGGTCTTTAGCAGAGAAGGCAATGCAACCCACTCCAGTACTCTTGCCTGGAAAATCCCGTGGACGGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCTCGAAGAGTCGGAAATGACTGAGCAACTTCACTTTCACGCATTAGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTCCCTGGAGCATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTTGCACAGATTTAGACACGACTGAAGCGATTTAGCAGCAGCAGCAGCAGTAGCAAAGGTCTTTAGTATTTACCCTCCCTCATCTCAGGTGATAAAGAGCGGCTTACAGAGTAGTTGCTGAGGGTTTCCTACTTTAGTTGATTGTCAAGTAATGTTATAGTTGTTTATTTATCATTTTTTATAGAGTACTTTTCCAGTTCATTTTCTTTTTCTTTAG
Seq C2 exon
ATTTGGGAGCAAAAGCAAGTCTGCCACCAACCTAGGACGACAAGGCAACTTTTTTGCTTCTCCAATGCTCAAGTGAAGTCGTGTCTCCTGTTACTTGACAGCATTTACTGACTGTGGGGAAGAGTGCACCTGTACTCTCTACTCTGCAGCCTCATTACTACTTTTAGCATTCTCCAGGCTTTTAATCAAGTTTAATTGTGCATGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012784:ENSBTAT00000016988:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.865 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTACTGGGGCCTGTGA
R:
CCCCATGCACAATTAAACTTGA
Band lengths:
316-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]