MmuINT0130893 @ mm10
Intron Retention
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99620496-99622324:-
Coord C1 exon
chr15:99622219-99622324
Coord A exon
chr15:99621465-99622218
Coord C2 exon
chr15:99620496-99621464
Length
754 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTTCTCTAATTTATTTCTAGATT
3' ss Score
9.09
Exon sequences
Seq C1 exon
TGAGCTTACTGGGGCCTGTGACCACTCCTGAATTCCAGCTTGTCAAGACTCCTTTATCAAGTTCCCTGTCACAGAGGTTGTACAACCTCTCCAAGAGCACACCCAG
Seq A exon
GTATGCAGGGGTGAGGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCGCATGCGCATGCGCACTCGCGCACGCTCGTGTGCATGTGCCTCTATTTTCTCTCTCTCTCCCTCTCCCTGTGAGTGTGCGTGTGCCTGTGTGCCTGTGATTGAGTCGCAGCAGAATGCTGAGGTCAGTGCAGACCTGTAGGAATCAACTCTTTCCTACTTCTCCTACTGTCTTCAGGTTCAAGGACAGTAGTTTATTGAAGCTATATTGATGTATCTGCCTGTAGTCCCAACAGTTTAAGCAATTGGGAGACAGGAGAATCGCCATGAGTCCATGGCCAGTTAGAGCCTTATCTAAAAAGTAAATGAAAAGAACTGAACAAGAAGTGGGTACTGTCACATGAAGGTCTCTGCAGTGACCCTGTGACCTGTCCTGCTGGGTCAGCAGCACCTTACAGAACAGCTCCCTAGACAGTTCCCATGTTTAGTTCTCTATGTCAAGTAACAGTATAATTGTCTATTCAGTATTTTTCATAGAATATGTTTTTTAAAGAATTCATGTGCGTGTATAATGTGTGTGTACCAGGGCACCCACTTGGAGAACTTGCAGTTCTTTCCTTCCACCTCCATGTGGGCTCTCAGGGATGGCTCTCAGGTCGTCAGGTGCATATAGTAATTGCCTTTCTTCTGGTGTCACTCACCAGCCTGTAGAACACTTTTCTGATTCATTTTCTCTAATTTATTTCTAG
Seq C2 exon
ATTTGGGAACAAGAGCAAGTCTGCCACCAACTTAGGTCAACAGGGCAAATTTTTCCCTGCTCCGTACCTCAAGTAAAGCTGTGTCTGCCTGTGTTTACTGCACGAGACACCCCTGTCTGCTCTTCAGCCTCCTGTGTAATGACTACTTTTAGCATTTTCCAGACTTTAAATAAAGTTGAACGCGTATGAGAGTTTGAGTGTTGCATAGCTCCCTCCCACCTGGACACTTAGCACCTTTACTAGTTGTCGGGAGCTTTAAAATAGGAGATCTTTACCAGGGCCGAAGGGGAAATGGGTATAAGTTGGGGCTCTTAGGGGGAGGGGAGAGGAGATCCCTTTGGCTTAAAGCCAAATACTGCTCATGAAATGACTTTGCTGTGGTGTCACTTAGACAATGACAGAAACTGTACCTCTTAGGTAACGTCTTAGTTATCTCAGGACAGGATAAAGAGCTGCGCAGCGGCCCCTTCTCAGAACACAGGCCTCTTCCTCCTTCGGGGACTGACAAGAAGCTTGGAGCCCTCAGCGGGATGGGCCGGGCCACTGATCTGAGGATGCTTCACTTCTGTCTGGGTTAAGCTGAGAAAGTGCCACAGGCTCTGATCTCACACAGCGTGCTGTTTCTAGCCAGCCTCTGCCTGGATTTTGCAGTCAAAGTCAGGTTGATCTGAAGCCGAATTCGTTCTGATGCCTGACCCCCTTGTTTGTCCAGTGGAGCCCATTTAAAAAGTCAGCTAGCAGTTCAGAAGACAATTTTCATATAGCAAGAAAGTTAGCTGCTTCTGTCTTTGGTGAAGTTTTTCTGTGAAACAGATCTATATATGTGAACATTGGCTTTTTTGGTTAGCATTTTCCAGTGTTCAAAATGGCTTCCTTCCCTGGGATGTTTTCTGACCCATACTAACCCTTACCTGTAACATGTATCTGGAATATTATGTGGAAAAAATAAATAGCTTTTTCAAAGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015:ENSMUST00000171702:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.360
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCTCCAAGAGCACACC
R:
CCCCCTAAGAGCCCCAACTTA
Band lengths:
343-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types