GgaINT1023219 @ galGal4
Intron Retention
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:342397-342925:+
Coord C1 exon
chrLGE22C19W28_E50C23:342397-342502
Coord A exon
chrLGE22C19W28_E50C23:342503-342836
Coord C2 exon
chrLGE22C19W28_E50C23:342837-342925
Length
334 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTCAACTTCTCTTGAACCAGAAC
3' ss Score
5.99
Exon sequences
Seq C1 exon
AGTGCATATTTGAACCCCTCACTACTCCGGAGAGGCAGATGTACAGGAGGCTGTCTTCCAGCTCCCTGTGCCAAAGGGTCCTCTCTACCTTCAGCATGACCCCCAA
Seq A exon
GTAAGTTCCTCTGGGTGCTGTATGGAAATGTTGGGATGGCTACAGGTGGTTTGGGTGTTCAAGAGGAGCTAGAATAGACTTCTGGGCACAATTCTGGGAGCAGCTTGGATTTACTACTGAATCTATTTGCCTTAATCAGTGCTGTAGTAACAGTGCAAGCTGCATAATGGCTAACGAGCATTGTCATGTGGCAGGGAGAAGAGTGGGGTATTTTGGTTGTTTTTTTTCCTTGGGAGGTGGGTAGAACTTGGGTGAGTGATCCCTGGGAAGGGGAGACTGTTAGATGTCTATATCCAAAACCCAAACCTTATATTTTCAACTTCTCTTGAACCAG
Seq C2 exon
AACTGCGAGCAAAAGCAAGTCAACAACCCAGCTGAGGCGTCAAGGCAAATTCTTTGCCTCTCCTGTGCTGAAATGAAATGGACCTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271:ENSGALT00000010135:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCATATTTGAACCCCTCACT
R:
TCCCAGGTCCATTTCATTTCAGC
Band lengths:
195-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]