DreINT0123830 @ danRer10
Intron Retention
Gene
ENSDARG00000015460 | racgap1
Description
Rac GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1917]
Coordinates
chr23:33833875-33834728:-
Coord C1 exon
chr23:33834617-33834728
Coord A exon
chr23:33834534-33834616
Coord C2 exon
chr23:33833875-33834533
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CTGATCCATCTTTTTTCTAGGTT
3' ss Score
10.14
Exon sequences
Seq C1 exon
TGAGTATGTTTGGTCCCATTACGACTCCTGACCAGCAGATGAGCAAGACTCCATCATCCAGCTCTCTCTCCCAGCGCATGAAGAACGCAACTCTCAATGCTATCACTCCAAA
Seq A exon
GTAAGTTAGCATCTCATCACATTTTCTATCATTACGACATGCTTCAGTTGGAGAATTGGTGAACTGATCCATCTTTTTTCTAG
Seq C2 exon
GTTTTCCAGCAGGAGCAGAGCTACAGCCGCTGTCCCTCGGCAGGGGAACTTCTTCGCCTCGCCTCTCCTGAAGTAGCCCTGAAGCTCTTCAAGGTTTTTCCTTCACTTTGGGAAACAGCTGCAATATATTATATTGTCTTATTTTATATCTGGCTCGTCCATCAATTCAAGCCTTTTTTAACACTACTCATTTTATCTGTCATATTTTATATTAACATTCGTATTTTAGTCACTTTTAAATGTTTTAATGTACTGTTAAGATCACAACCAAAGCGATGGGCTTTTATAAGCACTTCCATCAGTCACTGAATCCACAAAATCTGCATAAAGTTGGGAGTTCTTTATCAAGAAACCTGAACTTAATTGTAGAAAAAAGGTTATGCTAAATCTAGTTGTAACCTTTGTTTGTATATAGAAATTGCATGCTTGTTATAGAACGCGCAAAATCTCAATTTCTTGGAGGGTTCGAGACTGAAGTGACTATTCGATTTTTCTGTCGAGTGTAAACTGTTTTTAAACATGGTTTGACTTCCACAGCCAGTAGATATAATGCACAATTTGTGGCTACTGATATTAAGAGTTTGTTTAAATAACCAATTTGTGTTGTTTGGAACACTGTGCTTCTGTTTGGTGGGATTCAGAATGGTGAGAGAAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015460:ENSDART00000027959:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.440
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCAGCGCATGAAGAAC
R:
TGCAGCTGTTTCCCAAAGTGA
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]