RnoINT0123520 @ rn6
Intron Retention
Gene
ENSRNOG00000049033 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:RGD Symbol;Acc:1305912]
Coordinates
chr7:141277312-141279479:-
Coord C1 exon
chr7:141279374-141279479
Coord A exon
chr7:141278333-141279373
Coord C2 exon
chr7:141277312-141278332
Length
1041 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TCTCTCTAATTTATTTTTAGATT
3' ss Score
9.62
Exon sequences
Seq C1 exon
TGAGCTTATTGGGGCCTGTGACCACTCCTGAATTCCAGCTTGTCAAGACTCCTTCATCAAATTCCCTGTCACAGAGATTGTACAACCTCTCCAAGAGCACACCCAG
Seq A exon
GTATGCAGAACTTCTCAGGGGTATGTGTGCACATACTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCGCGTGTGCGTGTCTGTGCGTGTGTGCATGTCTGTGTGTGTGCGAGTGTGCGTGCGTGCGTCTCTCTGTGTGTGTGTCTCTGTGTGTGTGTCTGTGTCTGTCTCTGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTCTCTGTGTGTGTATGTGTGCGTGAGTATGTGTGTGTCTGTGTGTCTCTGTGTGTGTGTGTGTCTCTGTGTGTGTGTCTCTGTGTGTGTGTGTGTCTGTGTGTGTGTGTCTCTGTGTGTGTGTGTCTGTCTGTGTGTGTCTCTGTGTGTGTGTCTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTCCTGCATGAGTTGCAGCAGCATGCTGGGGTAGAGCATACCTTGTAAGAATCAACTCTCTCCTACCGTGTAGTTCCTAGGAGTTGATTCAGGTCTTCAGGTTTGGGGACAGTAGTTTATTGAAGGTGTATTGGTGTATATGCCTGCAGTCCTCCAACAGTTCTAGCATTTGGGAGACTGAGACAGGAGAATCACCAGGAGTGCAAGGCCAGCCGGGGCCTTATCTAAAGAAGTAAATGAAAAGAATAACTGAAGTAGAAGTGGAAACCTCAGATGAAGGGCTCTGCGGTGACCCTGGGACCCACCCTGCTGGGTCAGTAACACCTTACCGAATAGCTCCCTAGGCAGTTCCCATGCTTAGTTTTATATCAAGTAACATAATTGTTATTCAGTATTTTTTATAGAATGTTTTTTAAAGAATGTGTACTTACCTGCATGTGTGATGCCTGCACTGGAGCACCCACCTGGAGAACAACCTTTAGAGTTAGTTCTTTCCTTCCTCCTTTGTGGGCTGTAGGGATGGATCTCAACTTGTCCGGGTTCGCAGTAATCACCTCTTTGTGGTGTCACTCACCAGCCTGTAGAGCACTTTTCTCAGCCGTTCTCTCTAATTTATTTTTAG
Seq C2 exon
ATTTGGGAACAAGAGCAAGTCTGCCACCAACTTAGGTCAACAGGGCAAATTTTTCCCTGCTCCGTACCTCAAGTAAAGCTGTTTCTGCCTACTGTCTGCCTACTGCAGGAGACACACCTGTTCGCTCCTCAGCTCCTGTGTAATTACTACTTTTAGCATTTTCCAGGCTTTAAATAAAGTTTAATGTATATGAGAGTTTGATTATTACATAGCTCCCTCTCACCTGGTGACCTAGCACCTCGTAGAGTTGTTGGGAGCTTTAAAATGGAGCTTTCTGCAGGGTAGAAGGACAACGGGAATCGACTATGGCTCTTCTGGGGGGGGAGGGGGATCTCTTAGGCTTAAAGCCAGATACAGCTCGTGAAATGACTGGTCCTGTGGTGTCTCTTAGACAGTGACAGAAACTGTGCCTCTTAGGTAAACCTGAATTATCTCGGGACAAGAGGTTTTGGGACAAGATAAAGAACTACACAGAGGCCACAGGATGGCCCCTTCTCAGAAGCCAGGTCCTCTTCTCCTTCAGGGAGTGACACATGGCCGGGAGCCCTCTGCGGCGGGTAGGCCGAGGCACTGATCTGAGGATACTCACTTCTAACTGGGTTAAGTCTGAGTTGTAGAAAGTGCTAGAGGCTATGATCCCACGTGGCGTGTAGTCTCTAGTCAGCCTCAACCTGGACTTTGTTTGCAGTTGATTGGGGTCAAAGCCAGATTGGTTTAAAGCCTGATTCATTCTGACGACTGACCCCTTGTCCTTTGTCCAGTGGAGCCTATTTAAAAAGCCAGCTAATAGTTCAGAAGATTGTCTATTTTCATACAGCGAGAACGTTAGTTGCTTCTGTCTTTGCACTTTAGGTGGTGAGCTTTTTCCAGACATGTGTATGTAAGCATTGGTTTTTTGGTTAGCATTTTCCAGTGTCTAAAATGGCTTCCTTCCCTGGGATGTTTTCTGATACTCATACTAACCCTTATCTGTAAGACATGTATTTGGAATATTATGTGGAAAAAAATAAATACCTTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049033:ENSRNOT00000071885:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTATTGGGGCCTGTGAC
R:
TACGAGGTGCTAGGTCACCAG
Band lengths:
349-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]