BtaINT0122313 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020791 | RAPGEF1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr11:101769450-101781760:-
Coord C1 exon
chr11:101781604-101781760
Coord A exon
chr11:101769539-101781603
Coord C2 exon
chr11:101769450-101769538
Length
12065 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TTTCTCTTGTGTGGGGGTAGGAG
3' ss Score
6.2
Exon sequences
Seq C1 exon
CTCAGCCCTCTCCTCCTGCTACAGCCGAGTGTACCAAAGTCTCGCCAATCTCATCCGTTGGTCTGACCAAGTGATGCTGGAAGGCGTGAACTCAGAAGATAAAGAGATGGTGACAACTGTGAAGGGGGTCATCAAGGCCGTGCTGGATGGAGTGAAG
Seq A exon
GTACGTGCGGGTTCCCAGTGGGCCTCAGCAGGGACTTGGAGCTGCCTCACTGCCAGCTGTTGGTCTCACAAGAACTCGTTCCTGAACTCCTGAACATCGGAGTGAACCTCTTCCAGTGTCTGCTGTTGGGTGCCGCTCTGTCTCACAGCTGTTTCTGTCTCTCTGGTGCACATGCTCTTACAGCCGCATCGCCTTTGGTGGGCTGGGCCCATAGTTAGAAAAGCTGCCGGAGGCAGGCAGCCTGTCCTGGGCCTTGTGTTAAATCTGCACTGAGTATACTGCAGCTCTGGCTGGGCACACCTGCCAGCTCGACAAAGGCTAGTGGAAACTGTTTTTGCGTTGACTCTTAGCAAAACTCCCAGCATGTCAACTGCTACCATTTCATATTCTAAGAACTTCTTAGAGTATGAAAGCAGGATTAGTAGAAAAGCAGGATTGAGAAGAGTTAGAAGTAAAACTGAAATCTATGATGTAGTTTGTGAATTTACTACCCAGGGAAGTCAGAAATGGCATAATAGAAAATTATGAATCATTGTTAAGGTGGGAAGCAAAGTCCTTCTAAGGAAGGTTCTATGGTTCTGGAATTGGGGTCCAAGGGACAAACCCTAATTGAGAAAATAAGTTCCAGTGAATAAGGAGCAAGGCAGAATGTAGGGCAGAAAACAGGTGGGAGCCTGCAGGTCAGGACGAGGGCTGTGAGCGGTGAGCAGGTGTGGACCCTGCTGTTAGACGAGGCTGTGTGATATCGTGGAAGGAGGGCTAGGCTGGAGCCCAGTTAGATTTCACACCCGCGTTCACCTCAACTTACCAGTCTGTGAACTGGAGCAATTTCCTCAAGTGCTCTGAACCTTAGTTAACTCATCTATAAAACACATGTAGTTATGGCACCCTATATCATGGGGCTGTAGGAAGGATTAAATTATTTAATGCATGTAAAGCTTTTAGAACTATGTCTGGCATGCGAAGCACTCAGATCTTAGCTGCTGTTTATTATTAATTATGTGGTGCTAGAGGTGCACTTTGCAAATAGACCTCTTGGCTTGAAAAACTGTGGTGTTCTCCTCTCTAGACCTTCCTGTCCAAAATGGCGGCCGGGGTACTTACTCTAGGTCCAAAGACTTCCTTCCCCATTCAACCATGCTACTAGACTCCTAAAAGCTGCCTCCTTGGACAGGTATTCCCCAGAAGCTCTGGAGAGTAGAGTAAGGACCCCCTGATGGGTAGAAATTACAAATGGAAGGCTGAGAAAGTGTTACTTAACATTCCACACTGCTCTGGAATGAATATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCCATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCTGGAATGAACCGTGTGGACTGGGGTGATCTGGGTGGCTCCCTGCTCTGTATGAGCAGGGCTGCTCTGTCTTCGGGGACTTCCTGGAGCTTACTCAGAGGCAGGCGGGACTGGACACCATCACAGCATCCTCTGAGAGTTCCCAGTCTCTTCATCCCCAGAACAGTTAGGCCCTGCACCACCAGCTTTGGCCATGAAACCTACAGAGGCAGACCGCGGTCGCTGCTGTGTAGGGCCTGGTGTCGCTCTCCAGACCTGGCACCTGGTCACACATTCTCCCATGCAGGCCTCCTGGTCACTCTCTGAGGTCAGCAGGACAAGTGAGACGTGACCAGGGCCACGATTCGCCATCAGGGTGTGTGCACCTCTGCCTCGCCTCGCCTCTTCCTGTTCAGGCTTCTGGAAATGCTATTATTGACAAGTGTTATTTCTCAGGTGACATTGTTAACGTTTCCTTCTACTGCATGATTATAATAAGATGTTTAAAACAAGTCAGAACGTCACAAATACAAGAGTTTCCAGGCATGAAGCTTTGTGACATTCCCAAGTGGATTTTCTTTATGGGATCATGAACACGCCACTGTCAGTTGAAAAGTTGTCTAAAAGAAAATTTATCGGGTTTTTTCAGATTGACCAGGATGAGAGAGGGGAGGGAGCAAGAAAGAGACACCTGTTGATTATGAACCTGTCAGTGTCTGAACTTTTACACAATTGTCCCTAAAATATTTTAAGCAGAACAGAGATTCTCTCAGTGAGGAGCTCGGGAAATTTAGATTTGTTTCTTTTATTCAGGAAGCCATTAGTGAGAATCTCCTGTGTGCTGCGCAGTGTGGTGGAATTAGGAAGATAGTGATAAAACTGGCACAGTCCCTGACCTGATGGAATTTACAATCTAAAGGTGGAAAGGGCAACAGCCAAAGACCCGTAATTGTATAATTAATTATAATAGGAATGGGGCTATAGAGGAAAATGAGCATGAGGTCTTACTTGGGTCTTGGGGACCTTCATTTTTCAGGGTGATCAGAGATGCTTCCCCAGGGATGCTCCCAGGCAGGCTGAAGCCTATAGGATGAGCAGGAGCTGGCCTGCGTCACCAAGGGATATCTGTGGTTGGAGTCAGTCAAGACAGCAGGGACAATCTGGAACCTGTGGTGCTGGCACTTGTTGTTAAGGTCTAAGTTGTCATAACACTGACAGTTGACTCCCCACTTAACTCAAAGGCCCTCTCTTCCCATTTGCTGTAGGAACCACCTCCAGCCCAGGACTGTTGGAGGACTGAGTTTCTTGAGGTCAAACAGATACACGAGTTTGTCCTTTCAAAACCAAGACTCCACCTCTTCCTTGTTTTGCCTTTCCAGCATTCCTTCTCCTCTCAGGTGTACAGCTTCTTACCCGTCTCTCTAGACTCTGCTCTACCTCTTTTCAGATCCTCTTGGATCTCCCTGCTGAGTCCTCCAGCTTCTCCAACAGCACACACACACATTTAGTTTTTTGATTGAGGGAAAGAAAAAAGCCGCCTTCTTGCACTGACCTGGGGGAAAAACTTTGGAATACCCACAGTTCTGTCCTTTGACAGTCACCAACCAAAACTGTTCTTCTGTACCAGACTCACCTTGAATAAGGTGAATATTTTGAAAGAAATATTTTCCTGACTGTATGAGCTACGGGTAGATTTGACTAAAAGTAAATCCAAAATAATCCTGGCTTCAAGAGGTAGAACTTTATTTCTCCTTCATGTGTAAGATGCCTAGTGATAGGCACTCCAAGGCCAGTGTGGCATTTTCACAGACTGGCCGGGATGTGCTCTCCTGTCCTGCTTTCTCATCATCGTAACACACAGATTCCACTTCATGGTGCAGAATGGCTGTTCAGTCTCCATCAGTTACAAGTACTAGCAAGGAGGAAAAGAGAATAGGAAGTTGTGCCTTCTCTATTTGCTGGTACTTACTCCAAGGCCTCACAAACTCTCACATTTTATTGGCCAGAACTTAGTCGTGTGCCCGAGTGAAATTCTGTTAACAAAGAAGAGCAGATACCGTGGGGCACCTGGCTGTCTCTGCCACACTGACATTTAAGATCAGCCATCGCTTTTATTCCCTGTTCAGCCTATTTTAAGATTTTTTATTATGACAAAGTTTAGACATTTGCAAAAAGAGAACAGTGTAATGAAGCCTGATCTCAGAGCTTCCATGGTTGGCCAGTCTTGTTCCTTCCAGACCTCTTCCTGCCCCTCTGGTTTATTTGGAAGCGAATTTTAGACATCCTAACATCCGTTCCTCTGTAAATACCTTAGCACATAGCTTCAGAGCAGGGCACTTTTTTGCGAAGGGCCAGATAGATGTTTTAGGTTTCTGGGGCTGTGCTTGGTCTTTGCTGCATGTTGGCCTGGTGCGTAGTCTTTGTTTTTTGTTTTAATTTCATTTTTTTTAAAAAAGCATTTTTACCTTGAGAGCCTTACAGAAGTGTCAGGGTGTGTAATTTCCTCGGTTCTGTCTCATCACAACAAAAATTTGACGCGATGCACGTTAAAGCCCTCAGCGTGTCACAGCTCTCGGACAGTGTTATAGCTCTGTGTTACAGCGCAGTTTTATTTAGAAAATAAAGGAAAATACATCCTCGAGACGTGAGGGCATGCGGACCCAAAAGACGCCAAGAAAAGAGAAAAAGAGTGTGCATGCAGAGGAGAAAGACAACCCCCCCACACACCCTTTGGCTCCTCCTTTTATATGTTTTTCCCTCCCCCGGGTCTGCCCTATGTAAATTGGGCTAGCCAGGAGCGCTGATCTACCTGAGGTCCTCACTCCGGCAGTCGTCAGTCGGACCTTCCTTTGTTCTATTTTCGCCACCGCCATTCTGGACTCCTTTGTCCTATGCTAACTACCTAACAGAAGCAAGCCCTTGGCTGGATTTGGCCTGCAGGGAGTAACTTGCTGTTTCTAAACAGTTTGTTTTTCAATTTCATATCCAAATAAATTCCACACACTGTTATTCATTAATAGGTGTCTAAAGTTCTCCCTTCTCTGTAGTTTTATCCTTGCAGCTTATTTGTGTGTGTTTAAGGAGGGGTTGTTTCTCCTGAGAGTCTCCCATACTCTGGCTTTGCTGATTACATCTTTACAGTATTATTTAACATGTTCCTCTGTCTCTCGAGGGCTTCCCTGGTGGCTCAGATGGTAAAGAATCTGCCTGCAGTGCAGGAGACTTGGGTTCGATTCCTAGATCAGACAGATCCCCTGGAGATGGGAATGGCTACCCACTCCAGTATTCCTGCCTGGAGAATCCCATGGACAGGGAAGCCTGACGAGCTACAGTCCATAGGGTCGCAGAGTCAGACACAATTGGGCGACTAACACTTTCACTTTTCTTTCTGTCCCTTGAATTTCCTGGAAAATTAGGCTGAATCAGATTCAAGTTTGTGTATTTAGAAGAATGTTTCTTGGGTGCTGCCCTGCAGTTCCTTCTAGAAGCATCTTTCCCTTTTTGATGTTAATAGCCGTTGATGGTTATTGCTTAGATGGTTCATTCCCTGGGGTTGCTAAATGGCAGCATTCTAATTCTTCCTGCCTTCCCTTCCTCATTCCTTAGCAGGAATACTTTGAGAGAGACCTCCCCTTGTCAGTCATGGTTACCCTGTGTTATAATTCCCAGAGAAGAGGCAGGATCAACGCTCAGTTCCTTTCTTTACTTACGGGTTATCAGAAAGAGTGTTTCTCAGCTTCCTCTAACATGACCCGTGGATTGAGATTTTTACTGGAACATTCTGAACGCAGGCGTATAAGCACACTGTGTCCAGCCCACTGCACGTAGGACCTGTAGTGGTGTTCCCGTCCCGTCTTTGAGCAGTGACAGCTTCTTCACATTGTTTCCTGAGTTCATTTTGACGTGATCCCAGAAGTCTTTGATAGTTTTCTCACTTTGGGGTATGAAAAGATGTTCTGGGTTCATCTTGTAGACTTGTGTGTGAATGTGGTAATAACTTTATTGAGACATAATGCCTCCACCATACACTTCACCCATTTAGAACGGACAATGTAGTGATTTTTAGGATCTTCTCTGCATCGTGCAGCCAACTCCACAGTTGATTTTAGACCGTTTTCATAGCTTCAGAAAGGAACTCCACACCCTTTGTACTGTCCCCAGACCCTGCCCTTGTTCTCTCCATCCCCCCAGCCTTTGGTAACTGCTAGTCTACTTTCTGTCTCTGTACATCTGCCTCTTCTGAACACTTTACATCTATAAATAGACTCATGTACTATACCGTTTGGCCTTTTGTGATTGGTCCTGTCACTTAGCATCATACTTTTGAAGTTCATCCATGCTGTGGCGTGTATCAGTACTTTATCTCTTTATTGTCAAACTGTACTCCATTGCATGGATACACCACATATTATTTATTCATGGACATATGGACGTCTCAGTTGTTTCTACCTTTTGGCAGTTTGGGGTAATGCTGCTGCTGCAGACACTCAGGTATAAGTTTTTGTGTGGGTTGTTGTTGCTCAGTCGTGTCTGACTGTCTGTCTGGATATATGTTTTCATCTCTCTTGGGTATACGCCTAAGACTGCAAGGGCTGGGCCATATCGTAACTCTGTGTTTGATCTCGTAACAGACCACCATACTGATCTCTAAAGCAGATCTACCGTTGTACGTCACCACCAGCGATACACGGGGGTTCCAGTTTCTCCACGTCCTCACCAGCACCTGTCACCATGGGCTTCTTTGACACAACTGCCTAGTGGGCTTGCAGCAGTTCCTCACTGTGCTTTTGCTTTTCATTTCCCTGATGGCTGATGATGATGAGAATCTCTTCCTGTGCTTACTGGCCTTTAGAGAAACGTTTATTCAGATCTTTTGCTTATTTTCAAATTGTGTTATTTATCTTTTTTTTATTATCATTATTATTGAGTTGTAATCACCTAGTACATTTCTTCCCACCAACCTGGTATCAGCCAGATTCCTTTAGAGAGCTCTGGTCCCCTTTCTCGGGGAATGGTGTTCAGAGACCTCATTCCACAGTTCCTCATTGCTCCTAACTGACCACGTGCTAGTTTCTTTAAGAGAAAACATGTCCTGAGTTTATTCTGGTAGTTCCAGTTCACTTCCAGGACCACTGGAGTTTTAACTTACTGTCATCAAGCTTATATCTTAATTTCCTTCCTCCCACTCTGAAAAATCCGAGTTTTCAAAAATATCAACGTAATGACTCATTTGTCTTTTTCAGAACACAAACACAGTAGTCTCAGAATAACAGCAACCTCCTCCATCAGCATGAGTATTAGAAATTATTAAAGATATGTCAGAGTTATTTTTTACCTTCAGGTTATCCGTCAATTTGCAGTTATTTGAAATAGTTCTTCTTTGTGTGGCCATAGGGCTACATGGTCTGTCCTATGTACCTTCTATTTGCGTACTTCCTGTGTGCAGTATTCTTAGTATTCATTGCGTTACGGAAGCGGAGAAAGAGAGGAAAGGGGAAAGAGGAAGACGACAAGGTACGTATAGAAGGAAACTGCTGTGTAGGAACTGTGTGATGTACTTTCATAAGTCAGAAAAGGCATCATGCTGCTATTTCAGGTTCATTTCAGGTTCATACACTCCACGTTTGGGGGTGTTTTGTGGGTATGTTTTTTAAATTACAGGGTATCTTAAAGTAAGATAAGCCCTCCCCAGTCCACTCTCTGAGCAGTTCACCAAGTATTTTCTCTAGTAGACCTGCTGACATGAAGCACTGCACTGAACATTTACTGCTTTTTCCTTCTCACGGGTGTTGGGTGTGGAAGGACTTCCTATCCAGCTAGAAGTTGTAGCAGCAGCAGCTCCTTTGGGGCTGTGATAACGCTCTGCTTAGTTACAGTCAGGGGAAGGGCTTTCAGTGATAGAGTAAGCTTGTTCAGGGCCTTTTTGGGATGACTCCTGAAAGCTTTATTGAAGACACAAGTGCTCAGTTTCTCAGTTACACCCCTTCCCCATGCTGGCCTGGCCCCGCCTCTGGGCTGATGGAATATGAGCTCTCCTCTGGCTGCCTTGTGTTGAAGCTGCTATGAACTCCAGAAGCAGCCTTCAGGAGTCCCCTGCCAGCCCACTGCCCGCGGGCACCTTGTGCTGAGCACGGACGGGAAGGAAGACACTTCCTCTGCTCTGTTGACACCACGCCCCACTTAGGCTGGGGCGAGGAAAGTCCCTTTTTGTCACCATGGAAGTCTCACAGGGTCTGGGGCGCCCTGTGATGGCGTTATATCTCTGTAGTTACAGGAAGCTCCCCAGTGGTCTGCGTCCAGCGGACAGCTCGCCAGTAGAGGGGCTGTGTTGTGGCCGTAAGCTCAGGGCCCGGCGGAGACAAAGATGTTGACAGGTCGGGACGTGGCCTGAGCAGAGCAGCAGGCCCCCGGCTGCAGAGGAGGGCGCTTGCCAGCTACAGCATGTTTTCTTCCCATGTGAGCCTGGAGGGCTTGGCCTCCCCACGCACAGCCCACGTGCCCTCTGCCAGGCAGAGACCAAGAAGGTGAGAACAGATAGGAGTGTGTCTTACCTGAGCCCTGAACCGAGGGTCATTTCAGATGGAAGCATCTCTGTGATCACTCAGTATGAATAAAATGAACCTAGAAATGAAGCATTATGTATTTAGAAAGGAACTTTTCCAAATACCTTCTGGCTTTTGGAAACTGCTTTTCTGTGAACCGGCAGTTGTCTGATGCACAGCCGCCAGCTCTGGACCCAGTCTCAGTCGTCTCTCAGTCTCTCCTAACCTGTGCGTAGGAGGACCAGAAAGTCTGACGTCCTCCCAGAAATCTGGCTTCAGTGGAGGGCATAGGGCTTTCATTGGGGTTGAGGGTGTTAGGACAGTTGCCAAGGACGCGCCCATTCTAAGGGCACTCTTACTACCTGTGAGCATGAAGGCCTACTGGCCAGCCTGTCTGGGCTGGAGGGCATGGTGACCATGCCCCTCACCTGCGGCTCTGGGCCTGGGCCTGGCGGGGTGGGGGCCGGGGGCGCCAGGCTCTGCCTTGGTCTGGAATGCGGGTGCACACTTGCACACGTGTGCTATCTTCAATGATTCTGTTGCTGTTGTTCATTAGTTGGCTTCGCACAGCTGCTTCTCCAGAAAGATGGCCTTCTAATTATAGTTGCTCAAGAATTAGTGGAATGTTTTCCTGCCTCGGCAGATGCGAGTGTACACACTTCTGTCTTCCCTTGCCCTGCTCGTAAAGAGCATGAGCATGAGTGTGGGGCTTCCAAGGACTCCCCCTGATGCTGCACCCCCAGGGTAAACTGCCTCCCCCATCCCTCTACAGGTGACAGGATGCGGGGGGCTGCCTCCCTCTTCTGATTGCGTCAGCCCTTGGCTCTGCACCTCGTCTGTAATCACCAGCCAGGTAGCTGTTCCTTCAGCATGTGGGGGGTCATGTTTAACTTGTAGATGGTGGTTAACGGCCAAGGCAGACCTTCTCCTCTCTTCTCCCAGTCCTTGACTGTGGGCGGCCGCCACCCTCCTCATCTCTCCAGGAACAGGCATCGACTGTGGCAGAGTGGGGTGACACTGACTCTGATTATATGGAGTATGCCTGTTTTCTCTTTTAATTGGTATTTCAGAATTACTGTATGTTCACTGTAGCAAATTAAGAAAAAGCAGAGAGGCAAAAGCAAGAGAATAAGGGGTGTTTCACAGCCATCTTTTTTTCCATACATGTGTTTTTGGTTGTGTTTTGTTTCCAAAACATACTGTGTGTCCACCAGTGTACCATCTGGTGGGTTCTTTTCCACTTAACATTGTATTGTCTTTCCACACTATCATATATTCTTGTTCTGAGTTTTCTTAATAGTAGTATAATGGTCCATTGTTTGATTCTATCATAATTTATGTAATCAGTACCTAGTTCAGTTCAGTCACTCAGTTGTGTCCGACTCTTCCAGACCCCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTTACCCAAACTCATGTCCATTGAGTTGGTGATGCCATCCAACTATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATGAGTCAGCTCTTCGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAACATCTGATCTCCCTTAGGATGGACTGGTTGGATCTCCTTGCTGTCCAAAGGACTCTCAAGAGTCTTCAACACCACAGTTCAAAAACATCAATTCTTTGGCACTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCCTTGACTAGACGGACCTTTGTTGACAAAGTAATGTCTCTGCTTTTTAATATGCTGTCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAGCCCCCCAAAATAAAGTCGGACACTGTTTCCCCATCTATTTCCCATGAAGTGATGAGACCGGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTTACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCGCTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTGTTGATATTTATCCTGGCAATCTTGATCCCAGCTTGTGTTTCTTCCAGCCCAGCGTTTCTCATGATGTGCTCTGCATATAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTCCTCCTTTTCCTCTTTGGAACCAGTCTGTGTTCCATGTCCAATTCTAACTGTTGCTTCCTAACCTGCATCAGTACCTAGTAGTGAATATTTAATTCTGGAATATTGACTAGTCTGATTTTATCTGTGACATAGAATGCTGCAGTGACCATTCTTTGTGGCTTAATTTTTTTACATATCCATGTTATTTTCCTTGGGTTAAATTGTTGTAAAATATATGCAGATATTTAAGGCTTTTGATGTGAACTGACAAGTAGTCATCTTTTAGAAAGACTCCCCAAATCATTTCTTCCCTCTATCATGGAAGTCTGGAAGTTTCTGCTTTTATTACCATCGGAACTGGAGAACTTCTAATGATTATTGACCATTGGTTTTTACATTTGTAAATTTCTTTGGTATTTTTTTTGGTGTGTTCACCTTTTTTCTAGTTTTTGTGTTTTTTCAAAGAATGCTCGTTCCATGAAGGAAATGAATACCATGAAGGGTATTAACTCTTTGCCTTCGCATACTTGTTGCGGTTGCTGGGCAATGCGTTTTTAGTTGGAGAAGCTTTGCAGTCTGATCTAGGGGCACACTGCCATGTTGCCCCACTTTCTTCCATTGCTGCCTCCTCTGTAATTTTAGAAATAGTTGTTCATGATGAAAGCCTGAACTTCTCCTGAGACACAAGAAGGTCCTGCCCAGGAGTGCATCAACAGGAGAATGGATGAAGGAATTGGTTTATCCATACACTGGAATATAACTCGGCAACAGAAGGATCACACACAGACACGGCCATTTACACTGAGCAAAAGAAGACGGGTGAATAGAGACAGAGAGTGGGTTGGTGGCTGTGAGGGGCCCCGAAAAGTGCAGAGTTTCTTTGGAAGTAATGACGAGCCCCGAGGTTGATTGTGCTGATGGTGCCCAACACTGTGGACAGACTAAAACCCGCTGGATTGCACGCTTTAAATGGCTGGATTTTATGGCGTAAAGCTGTTCAGAAAAAGGTAGACACAAAAGTACATATTGTGCGGTTCCACTTACATCAAGTTTTAGGCAGAAGTGATCCAAGAAACAGAAGTGAGAAAGTAGTCAGTTGAGGTGGGGCAGATAGACTAGAGAGAATGGTGGAAACATTTTGTTTTTTGTTTTTTTTTTTTAAATTATTTATTTGGCTGTGCTGGGTCTTAATTGTGGCATGTGGAATCCAGTTCCCTGACCAGGGATCGGACCCTGGTCCCCTGCATTGGGAGCACAGAGTCTTAGCCACTAGACCACCAGGGAAGTCTCTCATTCTGTATTTTTTGAGTGGGTCTTATATGGAATATGCAGCCATAAAGGTCATCAAAGTCAGGGGAAATGCATTCTCATTGAAAGAAAACCAAGTAAACCCTAATTGCCTTTTTTTTTTCTCCTATTAAAAAAACTTATTTTCTGAAGTCATTTCTCTGATAGGTGATAAGCCCTGAACTTTCTGTCAGGTGACAAAGATCCCCACTCATCATCTCTGGGTACCCACAGATGCTGCACCCACAGATAGCTCACTCTGGGAAACCACCTTACCCCAGACCACAAGCTTAATCGTTAGTAGGCAGCATCCTGGCTTCAGAGAATTCAGAGCAGGTCTTCTCCACAAACCAACTGGGAGTCACTGCCAGGAGTTTGTGTGATGAATTTAGTCATTCTGAGACAGTGGGCTGGTCATTTCCCCCTTCCAAGAGGAAGTGTCTTTATGCATGCGAAACTTCTCTGCGCGCTGTGGAGGTGTTTTGGGCGGGTAGGACATGTTTTGGGAAGTCATGAAGATTACCTGAGTCAAACAATACTCGCCCATAGGGTGAGTGGGGACTCTGGGCGGTGGAGGGCAGACAGCTGGCCCACCTTGTCAGGACATTCAGCGTAGGAGCTCTCCTCGTGTCTCACCTCGTTTCTCTTGTGTGGGGGTAG
Seq C2 exon
GAGCTGGTCAGACTCACCATCGAGAAGCAGGGGCATCCATCTCCAACAAGCCCTGTGAAACCCAGCTCCCCAGCCTGCAAACCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020791:ENSBTAT00000032663:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development