BtaINT0122596 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63406722-63408810:-
Coord C1 exon
chr17:63408698-63408810
Coord A exon
chr17:63406915-63408697
Coord C2 exon
chr17:63406722-63406914
Length
1783 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
CCCTCCGCTTGCTTCTCCAGGAG
3' ss Score
11.03
Exon sequences
Seq C1 exon
CTCGTGGGCATGCCCTATCTGCATGAGGTCCTAAGGCCAGTGATCAACCGCGTCTTCGAGGAGAGGAAGTACATGGAGCTGGATCCCTGCAAGATGGACCTGGGCCGCACCCG
Seq A exon
GTGAGCCACACCTGAGGGATGAACCTGCCACAGCCCCCTCGTCTGCCTGTCAGACCTGTCAGGCTGGGTCTGTGCCTTCTGCCACCCCACCCCTCCTTCCTGCTTGGGAACCCTTATGTTCTACAGTCTTACAGCCTCCCCTGAGAGCAGCCAACCCCTTAGACCGTGTGGTGCGGTGGTTCTAGGCGGGACTCTAAGACATGAGTGCCTGGGTTCAAACCTCAGATCTGCCATTACTGCTGGGCAGGTTATTTCAAGCCTCGTGAATATCTACCTGATGGACTGTCGGGAGAGTGAACTGAGTCATATACACGAAGCCCAGCACTAACCAGTACTCCAGAAGTACTATTATTTCTATTATGGTGGTAGTGGTGGCTGAGGCCCCTGGGGGAGGGTCTGTGGCAGAGGTTGGCTTGCTGCAGTGCTTGATGACATGGGTTAGGGAGCAGGGCAATGCCAGGGTTGGGGGGTCATTCCATTTCTCCTGGGCTCCTCTTTTCTTTCCAGGACTTTTTCCCTCCAGCTCAAGCAGGTGGGCTTGTTCCTACCAAGCCATCAGAGCTGGCTGCTGGGCAGTCCACAGGGGACCATGGTGGAGGCAGGAAATGATCTTTCCTTCTCTTTGGGCCTTGCCCAGCAAGTGCTACCCACCCCTTCTGAACACCCGGGAGCAGGCATTAGGACCCCTTTTTACAGATGAGAAACAGCCTCAGAGAGGGGAGGTCACCTGCCTAAGGCTGCACAGCTGGGAAGTTGCCAAGTGGGGATTTGAACGCAGCCCCTGAGTAGAAGGGCAGAGTCCATCTGTGAAACCCCAAGGCCAGGGCTTTTCCCAGAATACCTGGCAAAGACAGTAGGACTCAGTGGGTGCCCGCAGGGAGCAGGGGCATCTGGGAACTGGCCAGGACAGGGTGCAGACAGACTCTGAAATTGGCAATCCTGAGTTCTAATCTATGTTCTGCCACCTATTGGCAAGGGGACTTCTCTGAGCCTGTTTCCTCATCTGTTAAATGGGAACAATCAGGCTACTTAAAGTGACCTTGGTGGCTCAGAAGGTAAAGAACACACTTGCGATGCAGGAGACTTGGGTTCAATCCCTGTGTCAGGAAGATCCCCTGGAGAAGGGAATGGTTATCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGGGGGCTACAGTCCACGGGGTCACAAAAAGTTGGACACAGTTGAGTGACTGAGCACCCCCCCCCCACACACACACACGTGTATGTGCCAAGCAGTAGGCTGAGTGCTGAGTTTGTAGCAGGAAACAAATGGACACAAATCTGTCTTACTGGGGAAGACAGGTAATATTAATAAACAAAAGAAGACTCTTGCAGGTGATTAGTGAAATGGAGGGAAGTAAAGTGAGGGAGGGTCGTGGGAAGAGCCAGGGAGGTCACAGGGACAGCCTCACAGAGAAGGGGGTGTGGAATCTAAGGCTTGGAGGAGGTGAGGGAGGGAGTCGTGTGCAGGTCTGCTGGAAGATGTTCCAGGCAGGGGAAACAGAAAGTGCAAAGGTCCTGGGGCAGCAGTGCGTGTCTGGCAGGTCTGCACTGGAAATGCAGGGAACCCGGGTCCATGCTGGTGAGCAGTGGGACAGAGATGGCCTCTTTGAAGAGGTGACTTCCCACAGGGGGAATGGACCAGTAGGAGGGGAGGCCACGGAGAAGGGATGAGAAGGTGGGTGCTCTCTGAGCTTAGTAGGGGCTGGCTTCTGAGGCACAACCCTCCGCTTGCTTCTCCAG
Seq C2 exon
GAGAATCTCCTTCAAGGGTGCACCCTCCGAGGAACACGTGCGTGAGGCCAGCCTGGGGCTGCTGACGGGCTACCTGGGGCCTATTGTGGACGCCATTGTGGGCTCCGTGGGGCGCTGCCCATCCGCCATGCGCCTCGCCTTCAAGCAGCTGCGCCAGCGCGTGGAGGAGCGTTTTCCCCAGGCGGAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(19.5=100)
A:
NA
C2:
PF0061614=RasGAP=FE(33.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTATCTGCATGAGGTCC
R:
CATGCTCCGCCTGGGGAAA
Band lengths:
294-2077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development