RnoINT0124482 @ rn6
Intron Retention
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41429848-41431403:-
Coord C1 exon
chr12:41431291-41431403
Coord A exon
chr12:41430041-41431290
Coord C2 exon
chr12:41429848-41430040
Length
1250 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
CTGGTGCTTGCTCCCTGCAGGAG
3' ss Score
9.67
Exon sequences
Seq C1 exon
CTCGTGGGCATGCGCTACCTGCATGAGGTCCTGAGGCCGGTGATCAGCCGCGTCTTCGAGGAGAAGAAATATATGGAGCTGGACCCTTCCAAGATGGACCTGAACCGCTCCCG
Seq A exon
GTGAGCGTGGCGGGGTGGCCCAGGCCTCCAGTCACACCTTCTTCTTTGCAGGTGCTGTAGGCTGCCATGTGCCAGCTGCCGCCTGTCTAGGGAGATGTGTGTAACCTCCAAGTCTTGTGTGGTGCTGCCACTCGGGCTGTTCTGAGTTCAAATCCCGGCTCTGTCTCTCCCGCACCCTGTGACTTGACCCTGATGCTTGAGGGTGCTGTGGGAACTTCTGTGTTTTGCATGTCAAGCTCAGCTGAGGATGATTCTGGAAGATGCTAGAGGCATCTAGAGGGTTGTCTGCAGAATGGGTCCCAAGAATCTTCTGTGAGATTGGGGCAAGTTAGGCGGTAATGAAAAGCCATAGCCCTGTGGGCTCCTCCTTCTTTCCTTGCTTGTTTCTAGAACATTCAGAGGGCCGGCTTCTGTGCTGGACTATAATGAGGATAATAGATTCCCCACACCTCCGACCATCCTGGGTGCAGGCCTCAGCATCCAGGGGAGTTGCAAAGTGGGAATTTGAACGTAGGCTCCAAATATAAGGGCAGAGTTATCTGTGAAACTCCCGGGGTATCCATGGAGACCATGGCAGCCTCAGAGGCCCTCACAGGTGATGGAACCCTGGTCCTAACTTCTGATGTCAGGTTTGACACCTGATGGGCCTCTGCTTTTCCAAGTCAGTTAGATGGGAGGAGTCAGATGCTCAGCTCACTCACTGTCAGGACCACATGGGGCAATACCAGGGGCCATGTGTTGAACACAGGGACTCAGAACTTCTGGCTGGAGGACACCAGGTGGTGGCGACAGTATTTGCCAAGGCCCTGAGTTTGGAACATCTGACATGTCCATGCTGAAGACACCCTAGAGCTTGTAACCATGAGTGACAGGGGGTGTGGGGTGTAGGTGGAATATGGCCATTCTGAGGAGGTGACAGTTTAGCTGCTTGTCAGAATGTTCCAGGACAAAGGAACAGTCACATCGAAGACTCTGAGATGGGACTCCCTCCCCCCTGGGTGTTCAAGCTCTAGCTGGGAGCCGGGTGTGAGGGGAGGGTGGGGCTGGGGGGGAGCCTGGAGTTAGGGAAGGGCGGGGCTGGTGGGAGGAGCCTGTCGGAGGGGAGGGTGGGGCTAGGGGGAGCCTGGAGTGAGGGGAGGGCGGGGCTGGTGGGGGGAGCATGGCGTAAAGGAATGGTGGCTGGCTGGGCTTCTGAGGCAGCAGGTGGCGTGCTCTGACTGGAGGTCCTGCCTGGTGCTTGCTCCCTGCAG
Seq C2 exon
GAGAATCTCCTTCAAGGGCACACCCACGGAGGAGCAGGTGCGGGAGACCAGCCTGGGGCTGCTGACCGGATACCTGGGGTCCGTTGTGGACGCCATCGTGAGCTCTGCCGGGCGCTGCCCACTTGCCCTGCGCTTAGCCTTTAAGCAACTCCAGCAGTGTGTGGAGAAGCGCTTCCCTGGGATGGAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374:ENSRNOT00000001856:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(19.5=100)
A:
NA
C2:
PF0061614=RasGAP=FE(33.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCATGCGCTACCTG
R:
TGATGCTCCATCCCAGGGAAG
Band lengths:
302-1552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]