GgaINT0006283 @ galGal3
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
NA
Coordinates
chr15:11513875-11514259:-
Coord C1 exon
chr15:11514147-11514259
Coord A exon
chr15:11514068-11514146
Coord C2 exon
chr15:11513875-11514067
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
3' ss Seq
AGCTGGTGGTGTCCCCACAGGAG
3' ss Score
7.64
Exon sequences
Seq C1 exon
GCAGTGGGGCTGCCCTACCTGCACGCGGTCCTGAAGCCGGTGGTGAACCGCATCTTCGAGGAGAAGAAGTACGTGGAGTTGGACCCCTGCAAGATGGAGCTGAGCCGCAGCAG
Seq A exon
GCGAGTGTGGGGACGTGTCCCCATCTTGGTGTCACCCACGGGCCACCTCAGTGGTCACGAGCTGGTGGTGTCCCCACAG
Seq C2 exon
GAGGATCTCCTTCAAGGGGTCCCTGTCGGAAGCCCAGGTGCGAGAGAGCAGCCTGGAGCTGCTGCAGGGCTACCTGGGGGACACGGTGGATGCCATCGTGGGCTCGGTGGACAAGTGCCCCCTCCTGATGAGGGTGGCCTTCAAGCGGCTCCGCAGGCGGGTGGAGGAGCGCTTCCCCTCACCGCAGCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(20.3=100)
A:
NA
C2:
PF0061614=RasGAP=FE(35.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGGACCCCTGCAAGATG
R:
CTTGAAGGCCACCCTCATCAG
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]