MmuINT0132015 @ mm9
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121114755-121116444:+
Coord C1 exon
chr5:121114755-121114867
Coord A exon
chr5:121114868-121116251
Coord C2 exon
chr5:121116252-121116444
Length
1384 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CTGCTGCCTGCTTCCTGCAGGAG
3' ss Score
10.06
Exon sequences
Seq C1 exon
CTCGTGGGCATGCGCTACCTGCACGAGGTCCTGAGGCCAGTGATCAGCCGCGTCTTCGAGGAGAAGAAATATATGGAACTGGACCCTTGCAAGATGGACCTGAACCGCTCTCG
Seq A exon
GTGAGTGAGGCGGGTGGGGTGGCCCAGGCCTCCAGCCACTCCTTATCCTTTGTAGCCATTCCATAGGCTGCTCTGTGCTAGGTGTCACCTGCCTAGGGGACATGTGTAACCTCCAAGTGCTGTTGCCACTTGGGCTGTTCTGGGCTGGACTGGGAAACTCAGAGACCCTGAGTTCAAATCCTGCCTCTGCCTCTCCCACACCTTGTGACTTGACCTGACACTTGGGGGCGCTGTGAGCACTTCTGTGTTTTGTATGTAAAGCTCAGACAAGGAGGATGCTGGAAAATGCTGTTGGCCCAAGTTGGTGTCATCCAGGAACCTTCTGTGAGACTGGGGAAGGTTAGGTTGTGAATAAAAGCCACACCCCTGTAGGTTCTTTCTTCCTTCTTTCCAGAATATTCTTCGCTATAGTCAGAGGGCTGGCTTCTATGCTGGACAGTAATGAGACTAATAGATTCCCCACACCTCTGACCATCCCGGGTGCAGATCCCAGTATCAAGGGGAGCTCCCTGTCCAAGATCACAGAACTGGGGAGTTGCAAAGTAGGAATTGAATCCAGGCTCCAAGTAGAAGGGCAGAGTTATCTGTGAAACTCCCAGGGGATCTATGCAGGCCATGGGAGCCTCACAGGCGATGGGACACTGGGGACCTCTGATTCTAGAGTCGGTCCTGACTTCCAATCTCAGGTTTGCCACCTGCTTGCAAGGTCATGTTGATGGGCCTCAGTTTCTAAGTCTGTGAGATGGGAGGAGTCAGATACTCAACTCATGAGTCACTGTAAGGACCACATGGGGCAATGCCAAGGGGTGATGTGTTAGACACAGAGGCTAAGAGCTTCTGGCTGGAGGACACCGGGCAGTGGGGACAGTATGAGCCAAAGGTCCTGAGTTTGGGACATCTGACGTGTCCATGCTGAAGACACCCAGAGCTAGAGCTTGTAACCTTGAGTGACAGGGGTGGGGGGATGGCCATTCTGAGGAGGTGACAGTTCTGCTGCTCCAGCACCTTCCAGGACAAAGGAACAGCTCCTTCAAAGTCTCTGAGAAAGGACTCCCCTCTGGGTGTTCAAGCTCTGGCTGGGAGCCTGGCGTCAGGGGAGGGCAGGGCTGGTGGGGAGAGCTTGGTGTCAGGGGAGGGCGGGGCTGGTGGGGGGAGCCTGGTGTCAGGGAAGGGCGGGGCTGGTGGGGGGAGCCTGGTGTCAGGGGAGGGCGGGGCTGGTGGGGGGAGCCTGGTGTCAGGGAAGGGCGGGGCTGGTGGGGGGAGCCTGGTGTGAGGGGAGGGTGGGGCTGGTGGGGGGAGCCTGATGTGAGGGGAGGGAGGCACAGTGGAGGCTGCAGATGGGGTGCTCTGACTGGAGGTCCTGCCTGCTGCCTGCTTCCTGCAG
Seq C2 exon
GAGGATCTCCTTCAAGGGCACGCCCACAGAGGAGCAGGTACGGGAGACCAGCCTGGGGCTGCTGACCGGATACCTAGGGTCCGTTGTGGACGCCATCGTGAGCTCTACAGGGCGCTGCCCACTTGCCTTGCGCTTGGCCTTTAAGCAGCTCCAGCGGTGTGTGGAGAAGCGCTTCTCTGGGATAGAGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-Rasal1:NM_013832:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(19.5=100)
A:
NA
C2:
PF0061614=RasGAP=FE(33.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCATGCGCTACCTG
R:
TCTATCCCAGAGAAGCGCTTC
Band lengths:
296-1680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: