BtaINT0122606 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63421263-63421595:-
Coord C1 exon
chr17:63421482-63421595
Coord A exon
chr17:63421325-63421481
Coord C2 exon
chr17:63421263-63421324
Length
157 bp
Sequences
Splice sites
5' ss Seq
GGGGTGTGT
5' ss Score
3.14
3' ss Seq
ACATGCCTGCCTTTCTGCAGGCA
3' ss Score
9.63
Exon sequences
Seq C1 exon
GACAGCAACCATCTGGCGGAGCCTGAGCCCCTTCTGGGGGGAGGAGTACACCGTGCACTTGCCCCTGGATTTCCACCATCTGTCCTTCTACGTGCTGGACGAGGACACAGTGGG
Seq A exon
GTGTGTGTGCTGGGGACCCAAACCTGGGCATCTGAGGGAAGGCGGGACACCCCAAAGCACAGTGCCTGTCCACGCAGCCGTTGACATCTGCGCCCACCTCCCCACGGGCGGGGCAGGGGTCCCTGACTTGGACCCTCACATGCCTGCCTTTCTGCAG
Seq C2 exon
GCAAGATGACATCATAGGCAAGATCTCGCTGAGCAGGGAGGCCATTACAGCGGACCCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739:ENSBTAT00000022254:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
NA
C2:
PF0016825=C2=PD(11.0=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCAACCATCTGGCGG
R:
GGTCCGCTGTAATGGCCTC
Band lengths:
170-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development