DreINT0017750 @ danRer10
Intron Retention
Gene
ENSDARG00000041515 | RASAL1 (1 of 2)
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr8:1611571-1614969:+
Coord C1 exon
chr8:1611571-1611684
Coord A exon
chr8:1611685-1614907
Coord C2 exon
chr8:1614908-1614969
Length
3223 bp
Sequences
Splice sites
5' ss Seq
TGGGTAACA
5' ss Score
3.35
3' ss Seq
CTGGACACTTCACTCTGCAGTCA
3' ss Score
4.76
Exon sequences
Seq C1 exon
AACTGCGACCGTCTGGAAAAACTTGAATCCATTCTGGGGTGAAGAATACACTCTTCATCTGCCAATGGGCTTCCATACGCTCACCTTTTACGTGATGGACGAGGACACGATTGG
Seq A exon
GTAACAAACTCACAACTCTGCTTTTGAGTGAAAGAATGCTGGGCTGTTTTAACCCACAAATCTTGGGTCAAATTTGGTCAATCCCATCAGTTTGCTTGAAAAATGTAGAAGTGCTTTGAAATGTGCGTTTTTGTTCCGTGTGTGACGTAATATGAACTTAAATATGAAGACAGGCTGCGACTTGAAGTAGCTCCTCCTCCTTTATAAAAAACAGCCAATAGTGTTTTGCTTTTCTCACAGATCTGCCAGTGGGAGTGGTTTAGCTGATATAGCAGAATTAAAGGGGGCGGGATTGTGTCAGATACAAGAAAGCATTTGATTGGTCAGAAGATTTGATGAGGTGACAAACAAAACTGCTGATCTGTTTAGACAGACAAAACTGCAAACTTTGGATTTTTGTGTCTTCTAAATACACATTTTGTCACTATTTTTGAAGACATTAACTCATAGATATCCTTCAGACTAATATACTGAGAATAACATAAAAAAAACATTTTATAAAATGTATTAATAAGCTTTGTGATTCATAAACATCCAACAATTGTGGAAATGATTATAAGCTTAAGTACATTATTGCACATATCAGATATAATAGTTATAATTTGTGACATATGAAGTTATTTATCTGTTTGTACTTCCAACTTTTTCTGTCGGTAATATTGGACCCAATATTGGGTTACAAAAACCAGCATGTGAGCGTGCACTGAGAGTAAATGAGCAGTGGTGTTTGTGTGTGATCCGCTGAGGTGCACAGATGGTGCATTCTCTAAGTATGCTCCATATGTATGATATGAGCTCAAAAATATACTCACCGGCCACTTTATTAGGTACACCTGACCAACTGCTTGTTAATTTCTTATCAGCCAATCACATGGCAGCAACTCAATGCTTTTAGGCATGTAGACATGATCAAGACGATCTGCTGCAGTTCAAACCAAGCATCAGAATGGGGAAGAAAGGGGATTTAAGGTGACTTTGAAAGTGGCATGGTTGTTGGCGCCAGACGGGCTGCTCTGAGTATTTCAGAAACAATTTTCACAACCATCTCTAGGGTCTGAAAAAGAGGAAATATCCAGTGAGCGGCAGTTCTGTGGGTGCAAACGCCTTGTTGATGCTAGAGGTCAGAGGAGAATGGCCAGACTGGTTCCAGCTGATAGAAAGGCAACAGTAACTCAAATAAGCACTCGTTACAACCGAGCTCTGCAGAAGAGCATCTCTGAACACACAACACGGCCAACCTTCAGGCGGATGGGCTACAGCAGCAGAAGAGCACACCGGGTGCCGCTCCTGTCAGCTAAGAACAGGAAACTAACACAGGCCTACCAAAATTCACCAGAACACTTCGGGTCCATTAGTACCAATTGAGCATCGTGTCAACACCACAGCCTACCTGAGTATTGCTGCTGACCATGTCCATCCCTTTATGAGCACAGTGTCTCTCCATCATTCTGATGGCTACTTCCAGCAGGATAACGCTACATGTCATTAAGCACCAATCATCTCAGACTGGTTTCTTGAACATCACAAAGGGTTCACTGTACTCAAATGGCCTCCACAGTCACCAGATCTCAATCCAATAGAGCACCTTTTATTGAATTTTACAGAATTAATTGTATACACAGCAATGAGTAGACAGTGTTTTTAAGGGGAAAAAAAGAAATTAATTAATTAAAAATATATATTTATGAAAAAAAAAGTGTGGTCTAATTTAAAATAGTATTACAATAACACGGTGTGCACAGTTAAGGATAATTAGTAATTAGCCAAGACAGGTCAAACAAATTTTCCAAAGCTTCTAAATTGACTTGAATTTCTTTTTATTATATGTCCAATCTTTTCCATATGGATTCGTTAATCAGCATTATCCAATCTCAACCCATTTATTCATAATTAATTTCCTTCCCAGCATCAGTAGAGGTTTAAAGACATCTGAATGTTCCAGAAAAAAAAGAACACCTAGTAAGCACATTAATGGGGACCAATAGAGCAGGGGTTCCCAAACTTTTCAGCCCGCGACCCCCAAAATGACAATGCCAGTGACTCGTGACCCCCAATATCCTCTGAGGTGGTTATAAATACAGAAACCTGGCATGCAATGGTGCACACACATCAATAGACCCAAGTCTATTCTTCGTTTAATTTTTTTATGTATGTCAGTGCTTTAAATGTGCCAGAAAGTTTAACCGGGTGTTATAAAATCAATCTGCTGCATCTGACGCTATTGCTGTGTCTTTAATATAATGTAATTAGCCCAGGGGGCGCAATCCAATGGAAATGGTAACTATAACCTACTATAGTATCTAAATAGTATATAGTATATATCAGGGGTGCTCAATCCTGTTCCTGGAGAGCCACCTTCCTGCAGATTTCAGTTGCTACCCATATCAAACACACCTGAACCAATTAATTAGGACCTGAACACCACTTGATAATTACAGGCAGGTGTGTTTGATATGGGTAGCAACTGAAATCTGCAGGAAGGTGGCTCTCCAGGAACAGGATTGAGCACTCCTGGTATATATAAACATTTTTTTCTCTTCAGTAGTTTATGGATAAAATATGGTAATTCCTATGGTTTAATAAAAATAAATAGCTTTTTGAAAATCACCAGGCGACCCCCCTTCATTGTCCTGTGACCCCTCAGGGGGTCCAGACCCCCACTTTGAGAACGACTGCAATAGAGCACCGTTGGGATGTGGTGGAACGGGAGATTGGCATCATGGATGTGCAGCTGACAAATCTGCAGCAACTGCGTGATGCTGTCATGTCAATATGGAGCAAAATCTCTGAGGAATATTTACGGTAGCTTGTTGAATCTACGTCACGAAGGATTAAGGCAGTTCTGAGGAGAAGAAGGGGTCCAAAGCGGTACTAGTAAGGCGTACCTAATAAAGTGGCCGGTGAGTGTATACTACATTTGGAATCTGTACCATCTATCACTATATTTCAAAATATTTAAAAGTCTGTGTATTTAGAACAGTGCACATGTGTTAATAATTGATTATGGTTTATATTATTATGTGTCATGTTCTGTATTTTTTTGTAGCTGTGCTGGCTCCCTAGTAGAAGAGATATTGTATCTCAGGGGGACTATCCTGGTTAAATAAGTAAATTAAAACAAAGCAAAAACTCACAGATGGTGCACTGAGATCCACTGAGCACATCTCTGACTCTGATCTGTCTGTTTGTCCGTCTCCTGTAATCTGGACACTTCACTCTGCAG
Seq C2 exon
TCATGATGATGTCATCGGTAAGATCTCTCTGAGTAAAGACGTGATCGCAGCTCAACACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041515:ENSDART00000060865:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
NA
C2:
PF0016825=C2=PD(11.0=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]