RnoINT0124492 @ rn6
Intron Retention
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41442309-41442636:-
Coord C1 exon
chr12:41442523-41442636
Coord A exon
chr12:41442371-41442522
Coord C2 exon
chr12:41442309-41442370
Length
152 bp
Sequences
Splice sites
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
3' ss Seq
CTCCTACCGCCTTCCCACAGACA
3' ss Score
10.31
Exon sequences
Seq C1 exon
GACAGCAACCATCTGGAGGAGCCTGAGCCCCTTTTGGGGGGAGGAGTACACTGTTCACCTTCCACTGGACTTCCACCACCTGGCCTTCTACGTGCTGGATGAGGATACTGTTGG
Seq A exon
GTGTGTGGTGGATGGGTGGGGTGTGCATGGGGGTCCCATGCCTGGACTGCAAGAGGAAATATGCTACCTCTAGCCCCTCAATCTGTCCCCACGGCTCCAGGGGATGGTTGGTGCTGGTCCTAGCCTGACCTTCTCCTACCGCCTTCCCACAG
Seq C2 exon
ACACGACGACATCATTGGGAAGATCTCCTTGAGCAAAGAGGCGATCACAGCGGACCCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374:ENSRNOT00000001856:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
NA
C2:
PF0016825=C2=PD(11.0=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATCTGGAGGAGCCTGAG
R:
CTCGAGGGTCCGCTGTGATC
Band lengths:
170-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]