GgaINT0006278 @ galGal4
Intron Retention
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11198023-11198286:-
Coord C1 exon
chr15:11198173-11198286
Coord A exon
chr15:11198085-11198172
Coord C2 exon
chr15:11198023-11198084
Length
88 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGG
5' ss Score
4.66
3' ss Seq
CCATCGGTGTCACCCTACAGGCA
3' ss Score
7.68
Exon sequences
Seq C1 exon
AACAGCCACGGTGTGGAGAAGCCTGAACCCATTTTGGGGTGAGGAGTTCACCCTGCGCCTGCCCGGCGGCTTCCACAGCCTCACCATCTACGTGCTGGATGAAGACACCATTGG
Seq A exon
GTAGGGAGCAGTGGGGCTGATGGCAGCGGGTGGGCAGAGGGGTCAACACCACTCTGGGGCGGCCGTCCCCATCGGTGTCACCCTACAG
Seq C2 exon
GCACGATGACGTGATCGGCAAAGTGTCGCTGAGCCACCAGCAGATCTCTGCACAGCCGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150:ENSGALT00000013239:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
NA
C2:
PF0016825=C2=PD(11.0=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGTGTGGAGAAGCCTGAA
R:
GCGGCTGTGCAGAGATCTG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]