MmuINT0132026 @ mm9
Intron Retention
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121104815-121105138:+
Coord C1 exon
chr5:121104815-121104928
Coord A exon
chr5:121104929-121105076
Coord C2 exon
chr5:121105077-121105138
Length
148 bp
Sequences
Splice sites
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
3' ss Seq
CTCCTACCACCATCCTGCAGACA
3' ss Score
8.03
Exon sequences
Seq C1 exon
GACAGCAACCATCTGGAGGAGCCTGAGCCCCTTTTGGGGGGAGGAGTACACCGTTCACCTTCCATTGGACTTCCACCACCTGGCCTTCTACGTGCTGGATGAGGACACCGTTGG
Seq A exon
GTGTGTGATGGGTGGGCGGGGTGTGCATGAGGGTCCCAAGCCTGGATGCCAAGAGGAGGTGTGCTGCCTCTAACCCCTCAATCTGTGCCCATGGCTCCAGGGGATGGGGAGGGTCCTGGCCTGACCTTCTCCTACCACCATCCTGCAG
Seq C2 exon
ACACGATGACATCATTGGGAAGATCTCATTGAGCAAAGAGGCGATCACAGCCGACCCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-Rasal1:NM_013832:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(46.3=100)
A:
NA
C2:
PF0016825=C2=PD(11.0=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATCTGGAGGAGCCTGAG
R:
CTCGAGGGTCGGCTGTGATC
Band lengths:
170-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: