BtaINT0122631 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8717495-8718989:+
Coord C1 exon
chr7:8717495-8717639
Coord A exon
chr7:8717640-8718752
Coord C2 exon
chr7:8718753-8718989
Length
1113 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TATTGCCTCTTCTCTCCCAGCTG
3' ss Score
8.91
Exon sequences
Seq C1 exon
GACAGGTCGTGCGGCGTCTCTGTGCCTCCACCGAGGACTGTGAGGTGGACCCCAGTAAATGCCCAGCCTCAGATCTGCCCCAGCACCAGAGCAGACTGCGAAACAGCTGCAAGGAGGTCTTTGAGAACATCATCCACTCCTACAA
Seq A exon
GTGAGTGTCAGGGCACCACTGCTACAAGTGAGTGTCAGTGCTCTCAGTCACTATGCTAGCTCTGACTCCAAATTAAGGTTTCCAGATAAAATATAGGATGCCCAGTTAAATGAGATACCATATTTGTGACATACCTTTTTATACTTAAAAGAAGTATTCAATTTTTTAAAATCTGAAATTCAACTTTAACTGTTTTTCCTAAAGTTTTATTTGCTAAATCTGGCAACTCATTCCAATGTCATGCTACTTAACCCCAAGTAACATAGGACCTGATTCTTTGTCTTCTAGACTACAGGTGACCCCATACCCTAATTCCATGCCTCCTGACCCCAGTTAACATAGGGTCTCAATCCTACTGGGGCTTCTCTGGTAGCTCAGATAGTAAAGAATCTGCCTGTAATGCAGAAGACCTGGGTTTGATCCCTGGTTTGGGAAGATCCCCTGGAGAAGGGAATGGCAACCCCACTCTAGTATTCTTGCCAGGAGAATTCAATGGACAGAGGAGCCTGGCAGGCTTCAGTCCATGGGGTTGCAGAGTCAGACAGGATTCAGCAACTAATGCTTTCACTTTCACTCAATCCTATGGTCTCTGATTCCAGTAATGCCATACTCCCAATCCCATGATCCCTGACTTTAAGTAACCCTGAATCCCAAATCCCATGTAACTAGAATTCCTAGGCTTCCAATTCCTTGACCTCTGACCCTAGGTTAACCTGTGTGCCTAATCCCATGTCACCTAGGACATCAATCTCATGATTTCTGAATCTAGATGACTCTGTGACCCAATCTTATACTACTTCATATTATGTACTCTGTCTGGCACCCCAGTTTCATATCCAGTTATAGCTGGACATGAAGCTCATGACTTCTGTCCTCCTGTGAACCTATACCCCCAAATCTAAGATTTCTGACTCCAGAAGTCACCACAATGAGTATACCACCAACAAGCCCTGACCCCAAGGAGACCTATAACCCCAACCATCATTATCCCCAACGTCTTCTATCCTGGAACTTAGCATGCAGGCATCTATTGACCCCAACCTTAGGATTTCTATCATCCATGAACCTTATGCTCATATCTTTCCCCTCTGACTATTGCCTCTTCTCTCCCAG
Seq C2 exon
CTGGTTCCCAGCAGAGCTGGGCACTGTGTTCTCAGGCTGGCGAGAAGCATGCAAAGCACGTGGCTCTGAGGCACTGGGGCCCCGACTCGTATGTGCCTCTCTCTTTCTGCGGCTCCTGTGTCCTGCCATTCTGTCACCCAGCCTCTTCGGCCTAGCACTAGAGCACCCGGCACCTGGCCCAGCCCGCACCCTCACACTGATTGCCAAGGTCATCCAGAACCTTGCCAACCGTGCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCGAGGACTGTGAGG
R:
AGGTTCTGGATGACCTTGGCA
Band lengths:
342-1455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]