MmuINT0132050 @ mm9
Intron Retention
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32530983-32532164:-
Coord C1 exon
chr17:32532020-32532164
Coord A exon
chr17:32531220-32532019
Coord C2 exon
chr17:32530983-32531219
Length
800 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
TATTGCTTCTTCTGCCCCAGCTG
3' ss Score
7.28
Exon sequences
Seq C1 exon
GGCAGGTTGTGCGGTGTCTCTGTGCCTCCACTGAGGACTGTGAAGTGGACCCCAGCAAGTGCCCAACACCAGAGCTGCCAAAACACCAAGCTAGACTGCGAGACAGCTGTGAGGAGGTTTTTGAAAACATCATCCATTCTTACAA
Seq A exon
GTGAGAATCAGGGACCCAGCACTGAGCACACCCTGCCTCGCTGCCACGGTACTACCTTAACCAGCCAAACAGAATGCAGGGCACTCAAACTTGATTGAATATTTCAAATATGCTTACCTCCGAGTCAAATTTAACTGCCCGGGTCTCGTCTGCTACCTCCACTCTTGCCATGTCACCTAACCCCAAGTAACCTAGGACCAACTTCCTTTGCCGCCTTCCACCACAAATGATTCCATACCGCCTAACCTTGGTCAATATACGATTTTAATTTCAGATTATGCAGTGTCCTAACCCTATGACCTGTGACCTTAAGAGATCCCAAATCTCAGGGAAATGATTATTGGAAACATGAGCATGTCCCTTGGCTTCTAGCCCTAGGATAACTTGCATGCCTAATCCTGTGACATATGATCCTAAGTGACACTGTAACCCTGTAACGTTATATTATACTCAGAATCTCACTTTCACATACAATTAGTATACCCCAAGTTTATGATCTCTGTTCCCATGTGATCTGGCCAAATCTAAAAGTTCAGGACCTAAATGTTGCCACAATTATGCTATAAGTTCTTAGCCTCTGGAACCCAAGCCCCAAGCATTACTATCCCAGATATCCCCAATCCTGCAACCCAAACAACAGGTTCAGTGAAGTGAAAGAACACATAGGCTTCATGAGCCATAGGTCACTGATAAGCCATGTAATGTTTCCTATGCACCTAGCCTGTAGACTTACGGCCTTGGTCGTACTTACTCTTTCTGTCCCTGTCCCCTTCCTCTAACTATTGCTTCTTCTGCCCCAG
Seq C2 exon
CTGTTTCCCAGCAGAGCTGGGCTCCGTGTTCTCAAGTTGGCGTGAAGCATGCAAAGCACGAGGCTCTGAGGCCCTGGGCCCCCGGCTGGTGTGTGCTTCCCTCTTCCTGAGGCTTTTATGCCCTGCCATCTTGGCACCTAGCCTCTTTGGCCTGGCACCAGAGCACCCAGCCCCAGGCCCAGCCAGAACTCTTACACTCATCGCCAAGGTCATCCAGAACCTCGCCAACTGTGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142-Rasal3:NM_178785:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACTGTGAAGTGGACCC
R:
GTTGGCGAGGTTCTGGATGAC
Band lengths:
343-1143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: