BtaINT0122642 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8714657-8715590:+
Coord C1 exon
chr7:8714657-8714727
Coord A exon
chr7:8714728-8715463
Coord C2 exon
chr7:8715464-8715590
Length
736 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTCACGTGCGCCTTCGCCAGGCC
3' ss Score
6.04
Exon sequences
Seq C1 exon
GGGCTGCTGAAGCGGTTGAAAGAGAAGAAAAAGGCCAAGTCAGAGCTAGGAGCCAGTGCTTCCCGAGATGG
Seq A exon
GTAAGGGTCTCTGAGGAGCTAGAGGAGCTGGGATTCAACACTGCCCCTCCATTCCTCCTGCCGATAATTCTGATCTTCACCAAATATACCCTGTGGGCCTCTGTGTCCTGCCCCTTGTTGGGCAATGCTGGCGCCACTGAAAGACCCTTAGCATGGAGTCAGCCCTCCACTGAAGGGTGGGGGCAGAGTGTGACACAGTAACTCCAAAATAGCAGCCGAGTCAACACCTTGGTTTGGGAGTGAGTGTCTCAGAAAGGGACACTTGATCTGAGACGTGAAGGATGTGTGTGTGTGTGTGTGTGTGGTCATGTCTGACTCTTTGCAATGCCACGGACTGTAGCCCACCAGGCTCCTCTGTCAGTGGGATTTTCCTTGCAAGAATACTAGAGTGGTTTGCCATTCCCTCCCTCCGGGGAGATCTGAAGGCTGCTGCTGCTGCTGCTAAGTCACGTCAGTCTAGATGGAAGTTAATCAGGCCAAAAAGGACAGGAAAAGCATTCCAGGCAGAAGGAACAGCAAGTGCAAAGGTCAAGAGGACAAATGAAGTGACAAAAAGAAGGCCAGTGTGACTGGAGTACACAGACAGTGAGGAATTCAGTGTCAAAGGATGGATTCACGTCCAACTTAGGTTCAAGTTCCCTCTGGCTTCCTTCCACCCTTTGGGCTGTAGGGGGCAGGTTGTGGAGGTCAAGGGAGTGAGTAGGAATGACAGCTTGCTCACGTGCGCCTTCGCCAG
Seq C2 exon
GCCCCCCAGTGCTCTGGGCTCCCGGGAATCGCTGGCCACGATTTCCGAACTGGACCTCGGAGCCGAGCGGGACGTGCGGGTCTGGCCACTGCACCCCAGCCTGCTGGAGGAGCCCCACTGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(13.9=100)
A:
NA
C2:
PF0016924=PH=FE(25.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAGCGGTTGAAAGAGA
R:
AAGCAGTGGGGCTCCTCC
Band lengths:
190-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]