RnoINT0124524 @ rn6
Intron Retention
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14410913-14411497:-
Coord C1 exon
chr7:14411427-14411497
Coord A exon
chr7:14411040-14411426
Coord C2 exon
chr7:14410913-14411039
Length
387 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTTCCCTTCACTGGCCCCAGACC
3' ss Score
8.04
Exon sequences
Seq C1 exon
AAGTTACTCAAGAGGCTGAAGGAGAAGAAAAGGGCCAAGTCGGAACTGGGAGCCCACACTCCTCGAGATGG
Seq A exon
GTAAGAGTCTCTGGGAAGCTGGAAGGCTTGCGCCAGTCAGCATCTCTGGTCTCCTTTTCCTCATCTTCACCAGCTGCCTCCATGTTCTCTCTATTCCGCTCCACGCCAGGTGAACTCGGGGTCACAAAGACCCCAGCTATTTACTCATCTCTTGCTTGAACGGTGGTAGTCATCTCTAATGAAATAGAAGCTAACCAAATACCCTGGATCTAGGAACTCCAAAGAATGCGTGGAAATTCAGCCATAAGGAATGGGGGTGGGGGAAGGAAAGAGCGGATCAGTTGCAAAGATGCCGGGAAAGAGACAGCAGCTAGGGTAACTAAAGGTTAGAAAGCTAAGGATTGAGTGTGCAAAGAATGACGCCTTGTTTCCCTTCACTGGCCCCAG
Seq C2 exon
ACCCTCCAGTGCTCTTGGTTCCAGAGAATCGCTGGCCACACTCTCTGAGCTGGACCTAGGCGTTGAGAGGGATGTGAGAGTCTGGCCGCTGCATCCTAGCCTCCTGGGGGAGCCATATTGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167:ENSRNOT00000066722:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.209
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(22.3=87.5)
A:
NA
C2:
PF0016924=PH=FE(44.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTACTCAAGAGGCTGAAGGA
R:
CTGGAAGCAATATGGCTCCCC
Band lengths:
198-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]