MmuINT0132060 @ mm9
Intron Retention
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32534439-32535036:-
Coord C1 exon
chr17:32534966-32535036
Coord A exon
chr17:32534566-32534965
Coord C2 exon
chr17:32534439-32534565
Length
400 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTCCCCTTCACTGGCCCCAGACC
3' ss Score
7.32
Exon sequences
Seq C1 exon
AAGTTACTCAAGAGGCTGAAGGAGAAGAAAAGAGCCAAGTCAGAACTGGGAGCCTACACCCCTCGAGATGG
Seq A exon
GTAAGAGTCTCTGGAAAGCTGGAGGGCTGTGGTTCAACATTGTGCCATCTGGCAGCACTCTGGGTTCCTTATCTTCACCTTTGCCAGCTGCCTGTGTGTTCTCTCTATTCTGCTTTATGCTAGGTGAACTTGGGGCCACAAAGACCCCAGCTATTTTCTCATCTCTTGGTTGAACTTTGGGAGTCATCTCTAATGAAATAAAAGCTAACCAAATACCCTAGATCTAGAAACTCCAAAGAATGCATGGAAATTCAGCCATAAGGGATGGAGGTGGGGGAAGGAAATAGCGGATCAATCACTAGGATGCTGAAAGGAGACAGCAGCTAGGGTAACTAAAGATTAGAAAGCTAAGGCCTAAGTGAGTGAGGAATAACGCCTTGTTCCCCTTCACTGGCCCCAG
Seq C2 exon
ACCTCCCAGTGCCCTCGGTTCCAGAGAATCGCTGGCCACACTCTCTGAGCTGGACCTAGGTGCTGAGAGGGACGTGAGAGTCTGGCCACTGCATCCTAGCCTCTTGGGGGAGCCCTACTGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142-Rasal3:NM_178785:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(24.0=95.8)
A:
NA
C2:
PF0016924=PH=FE(43.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTACTCAAGAGGCTGAAGGA
R:
CTGGAAGCAGTAGGGCTCCC
Band lengths:
198-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: