BtaINT0122643 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011602 | RASAL3
Description
Bos taurus RAS protein activator like 3 (RASAL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001102236]
Coordinates
chr7:8715464-8715774:+
Coord C1 exon
chr7:8715464-8715590
Coord A exon
chr7:8715591-8715675
Coord C2 exon
chr7:8715676-8715774
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CGACTCCCCCTCCTCAACAGGTA
3' ss Score
9.42
Exon sequences
Seq C1 exon
GCCCCCCAGTGCTCTGGGCTCCCGGGAATCGCTGGCCACGATTTCCGAACTGGACCTCGGAGCCGAGCGGGACGTGCGGGTCTGGCCACTGCACCCCAGCCTGCTGGAGGAGCCCCACTGCTTCCAG
Seq A exon
GTAAGTAAAGGCAACTCTCCACCTCGCAACCTTTTGGCTCAACCTTTGGCCTCAACCGCACTCTTCGACTCCCCCTCCTCAACAG
Seq C2 exon
GTAACATGGGCGGGCGGGAGTCGCTGCTTCTCCTGTCGCTCAGCTGCCGAGAGAGACCGCTGGATCGAGGACCTTCGTCGCCACTTCCAGCCTAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011602:ENSBTAT00000015416:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(25.3=100)
A:
NA
C2:
PF0016924=PH=PD(17.5=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCGCTGGCCACGATTTCC
R:
CTCGATCCAGCGGTCTCTCTC
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]