GgaINT0038830 @ galGal3
Intron Retention
Gene
ENSGALG00000004323 | RASAL2
Description
NA
Coordinates
chr8:6778013-6779645:-
Coord C1 exon
chr8:6779492-6779645
Coord A exon
chr8:6778112-6779491
Coord C2 exon
chr8:6778013-6778111
Length
1380 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
3' ss Seq
CTGTCGTTTCCATGTTCCAGGTA
3' ss Score
10.02
Exon sequences
Seq C1 exon
GTCACGTGGGCTGCCGAAGCTGAAGGAGTCCCGCTCTCATGAGTCCCTGCTGAGCCCCGGCAGCGCAGTGGAAGCCCTGGACCTTGGGGCAGAAGAAAAGGTCTTTGTAAAGCCACTGCACAGCAGCATCCTCGGACAGGACTTCTGCTTTGAG
Seq A exon
GTGAAGAGCGTTGTCCGAATAGAAGCCTGGCAGGGCACTGTTCTCTTTGTAATTGGAGAAGGGGTCGGCAGCCAAACCTTCCTGGGGGTTTGGGTGGGGGCTGTTGGAGTCCTTGGGGCTGAGCCATCGGTGCAGGGATATCTTCAGCTGCTGCGTCTTCTAAGTGGAAAACTCATGTTAACTTAGGAAGTATCTCACCATGTGTAGTTTGGATGCGAGTGCGTGGTTGAAACGTGCTATTGCTCCTAAACTGTGTTCATTCTCCCCAGATTTACCTAGAATTAAACGTACAAATTATGCTATAGCTGAGGAATGTGATTTCCAGTCTGAACCTGCTTCTGTTAGCTCAGCCTGTTCCCTGGCTGCTGCAGGAGGGGCTCCAGTGACGGTGGGCACGTTGCTGCACTGCGGAGCAGGAGCCCCTCGCTGTTGGTGTGAGCACAGTGCTTACCTTACAGCATATCCACGTGTGCTGTTTGGCTGGACCTAAACCCACCGTAATCTGGCAGCAGGGGTGATGGGCAGCTGGTCCGGCCTGTCTGCTGTGGAGTTGCTCAGATGCGTCCCTTCTGGGGCAGAGATCTGTCTGCAACCTGGGAAACCACTCAGGCAGAAAACCAGCATATCAGGCTCTTCTCCCTTGGGGTGGATCCAGGAGCTGCTCCAGATTGCTTCGGCCTCGTATTCCTTCGGTTGGAAGCATTTTCCAGCTTCCTTAGGTTTGAGGTGTGCAGTGAAAATACTGGCAGCATCAGAGCTCTGAGGCTGTTGCCTCAAACTGCTTTTTAATTGCATGCACAGATGACTGGGAAGGGTAAATGAGGCTTTTCAGGCCAGGTACAACCGAAAGAACCAAGGTGGCTCACACCTGCGTGAAGCAGGATTGTGGATGGCATCAGATTGCGGGGCTGGATCAGGGCACAGCTCCTTTGGTTTGTATCTGATTGCCAGAAACATTTTGTAATTCCCGAAGACACCATTTCCACTGTGTTCTGACTTGTATTAATACAATGTTCTGTCTGCCTTCACCCTGTTCGTAACCAAATCATCTGCCTCTGAGACCCAGAAGGGGAAACTGCAACTGTTTAACAGCTATGGATCAATTAACAAGTGTTAAAAAAAATTAACTGCTTGATTAAAGCCTTGTTTAAAAGCCTTTAAGAGGAGCCTTTGGTGCTCCTCATATGTTACTTTAATTTGAACTGACATTTTTTTTTCTCTCTGCATTTTTTTGGGCCTTTCAACTTCTCTGCCTTGCAGGCTCCTGTATTGTTTTCCAGCCTTTTTCATGTTTACTTAGTTGCTCAAACATTGCTTCTTGCAGCCCCTTACATGTCTCCTAGGCTTGCCCGAGCTCAGCCTGTCGTTTCCATGTTCCAG
Seq C2 exon
GTAACCTACTCCAGCGGCAGTAAATGCTTCAGCTGTTCCTCTGCTGCAGAGAGGGATAAGTGGATGGAAAACCTACGCAGAACAGTGCAGCCGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323:ENSGALT00000006891:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(22.6=100)
A:
NA
C2:
PF0016924=PH=PD(12.8=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGTGGGCTGCCGAAG
R:
TATTCGGCTGCACTGTTCTGC
Band lengths:
250-1630
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]