RnoINT0124505 @ rn6
Intron Retention
Gene
ENSRNOG00000004917 | Rasal2
Description
RAS protein activator like 2 [Source:RGD Symbol;Acc:1307566]
Coordinates
chr13:74814220-74815718:-
Coord C1 exon
chr13:74815565-74815718
Coord A exon
chr13:74814319-74815564
Coord C2 exon
chr13:74814220-74814318
Length
1246 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
CTCTAATCTTTGTGTTGAAGGTC
3' ss Score
6.47
Exon sequences
Seq C1 exon
GTCTCGTGGTCTGCCTAAACTGAAGGAGTCACGTTCCCATGAGTCCCTGCTGAGCCCATGCAGTGCGGTGGAGTGTTTGGATCTTGGGAGAGGAGAGCCGGTCTCAGTGAAGCCACTGCACAGTAGCATCCTTGGACAAGACTTCTGCTTTGAG
Seq A exon
GTAAAACGGGGAGAAAAACATAGAAAGAAGGGAGAATAGTTGGTAATGATTTAATAGTTTCACTACCATGTTTCTGATTTGATCATCTTAACTAGTTTTCAATTCTTGAATTTTTTTTTCTTGAAAGGGAACAGTTAAAAATCTGTTAATAGAATTATATTTGCAATTGAAGTTATTAATAATTCTCATGCCTTTGCTTTCAAAAACATGAGCACTTAGTACATTCTCTGTATAGGTTACAGATGAACTATAGCTTCTCAGACTATTATGCTAATCTTTAATATTGATAAAGATACCATATACTAGTATTTAATCCTTAATTTTAAGGGAATTTTGAGAAAAACTCACCAAAATCACAGTTTTATAACTATAACATGAACAGTTCTTGACCAAGGACCATATTTTGTTCTTGTAATCTCCTGTGTGTTCCTAGATCAACAGCCTCATTTCAGGTCCTCACTGCCCTTCTGAATTAGGAATCACTAGAGCACACTGTCTGATCTGATTTATAGTATTAATGAACTGAGAGTGATAGAACACAGCAGTTTGAGCAGGTCATTTATATGTTTTTATAATTAATAAGAATAAGGTTATTGTTGTTATTATTACTATTATTGAAAATCTCTTGAACTTTTACTTGTGGAGCTCAGTTCAGTAGACTTTATTATGGACATAGTATACTATGTCCAGTGTTATAAATGTCTAGAAATCAGGGTTAGTTGCCTCCTGGAGGAGAAATGGATTCCAAAGAGTGATTCAGTTGTACTGATGCTTTCAACTTCATTTAGTAGCCTTCTGGTAGCATTGTAATGAACCAATCAGAAGAAAGCAATGATTTTATAAACATTTTCACTTTTTAGTTAATTTTTATTAGTTCAAATGAACATATTCATTTACAAGTTATTTTAGATGTGTCAAATTTTCTTAGTGTTGTATTTTTCTGAACCATAGGCAAGCTAAATTGTAAATGAGCTTTGTTCTCATAGCTCAGAAGTATGCATGCTACTTAGAGATTAAATTTTAAGTAAAGGTATGACAAAGCTAAAACAATTGTTTTAGTTTTACATGGGAAGATTTGAGTTCCAAACACGTCCCTAAACTATCGAAATTACAAGATAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACACACACACAACAGAGAGAGTCTTACATCATCTCTAATCTTTGTGTTGAAG
Seq C2 exon
GTCACCTACTTAAGTGGAAGTAAATGCTTTAGCTGTAACTCCGCTTCAGAGAGAGATAAGTGGATGGAAAACCTTCGAAGGACAGTTCAGCCAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004917:ENSRNOT00000033324:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(43.2=100)
A:
NA
C2:
PF0016924=PH=PD(24.6=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCGTGGTCTGCCTAAACTG
R:
TGGCTGAACTGTCCTTCGAAG
Band lengths:
247-1493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]