HsaINT0137707 @ hg38
Intron Retention
Gene
ENSG00000075391 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr1:178439422-178441647:+
Coord C1 exon
chr1:178439422-178439575
Coord A exon
chr1:178439576-178441548
Coord C2 exon
chr1:178441549-178441647
Length
1973 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
GTCTAATTTTTATGTTGAAGGTT
3' ss Score
6.68
Exon sequences
Seq C1 exon
GTCTCGTGGGCTGCCTAAACTAAAAGAGTCACGTTCCCATGAATCCTTGCTGAGCCCATGCAGCACAGTGGAATGTCTGGATCTTGGTAGAGGGGAACCTGTATCAGTGAAACCACTTCATAGTAGCATCCTTGGACAAGACTTCTGCTTTGAG
Seq A exon
GTAAAAATAAAGTGTAGAAAAAAGGAAGAGTAGTTAAACAACAATTGGATTTTATGTCCAGTAATTTTGCGATTTCATTGCTGTACAGTTGATGATTTAATTAACTGGTTTTCAGTTGCTAGAAATTATCTACTTACAGAGAAAAAGTTAGAAATCTTTTCATCTAATCATATTTGCAGTTAAAGTTATTAAAGATAGCTTTGCATTCCTTTTGGCTTTGCCTCCTTTCAGTAAAATTTGATTCTTAGTACATTTTCATCAGGGGACAAGACTAACAATAACATTACATTACTATGTTAATTTTTAGTATTGGTAAGGATGTCACTCATCATGTTATTTTTCTAACCACAGCATCAGTGGTTCAAGATCTGAGACCATGTTTTTCTTATTTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCTAATTCCAGGACATTTTGACCTAAATGTCTTATTTATTTTTGAAATCCCCTGTAACTAACCCAGACCCCAGCACATTGCAGGTGCCTGATTTTTGAATAAACAAAATTGCCAACTATCATAAGGTAATTTCTCCCTTCCAAATATGTACTACTAGCCAGTTACAAGTAAAATTCAAAAACTATATATACATGTATTTATACATACATAGAATTATTAGGGCTGAGATTTGATTAATTAACAAGAGCTTACTAAGTGACTACAGATGAGTCCTATACTAGATGTTGTAGAAGTCAAAAGATGTTTGTTTGGTTCCTCTTCTTATGGACCAGCACTGTCCAAAAGAAATATAGTACAATCTGCATGCATATCCAAAATATTATCATTTCAACATGTTCACTATCAGAGAAATTGTTTCCTTTTTTTTTAAAACTAAGTCTTCAAAATCTGATGTGTGTTTACACTTGCAGCACATCTCAATCTGGAATAGCCATGTGAGGCTAGTAGCTGCTGTATTGGACAGAGCATATAATCTGATCGGATTTATTAGGTTGTGACCAGAGATTGAGTTAATAAGTGAGCAGACTTCAGCAATTTGGGCAAGACATTTATTGGTGTTCTTTTTTATAAAAATCAGTTGAACTTTCTTGTATTTGCGGAACTCAGTTCATTAGGCTGTATATCAAGCCCAGAGTTAGGTGCTAAGTATATAACAACATATTTCATTTTTAAAGGACTGTGTTAATAGTGGTCAGGCTAACCTAATAAATGACTAGAAATCAACAGGCTGGTTGCGTAGTGGAGGAAAAATGGGTTCCAAAGATAGTAATTCAATATTAGTAACTCTTCAATTTCATTTAGCACCCTTCTATAATATAGTGAGGACAGTCTCAAGAAATCTGATAAGCTGTTTCAGAAACTCTCATCCTTTATTACCTATTTTTTACTAACTCAAAGTTGAACATATTTATTTGCAGGTAATTTAAGTTATTGCCTAAAAGGCCTTTAATTTTGATTTTTCTGAACCATAGGCCAGTTTTAATTTCCTTGGATGAATTTAAAATGGCCTTTGTTCTCATACCTGGAAATGGATGTGGATGCTACCTAAGCAAAAAGCAGATGTAGATGTAGATATAAGTATCGGAAAACTAGCAAAGATCATCTTAGTTTCTTATGGTATGATTTAGGTTCATAGCATATGTCTAACTCACAGCTTTGCATTCCTTTTGGCCTTGTCTACTTTCAATAAAATTGGACTCTTAGTACATTTTCGTCAGAGGATGAGACTAACAATAACACTAAATTAGTATATTAATTTTTTAGTATTGGTAAGGATGTCGCTCATTAGGTTATTTTTGTAACCACAGCATGAGTAGTTTGGGATCTGAGACCATGTTTTTCTTATCTATCCATCCATCCATCCTAATTCCAGGACATTTCGACCTTATCATTTAAGAGTTAGAGGTATGCTGTGAACCCTAATGACAGAGCCCTGAAATCCAGTGTTTTCTTTTTCTTATGTCTAATTTTTATGTTGAAG
Seq C2 exon
GTTACCTACTTAAGTGGAAGTAAATGCTTCAGCTGTAATTCTGCTTCTGAGAGAGACAAGTGGATGGAAAACCTTCGCAGGACAGTTCAACCTAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075391:ENST00000462775:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(21.9=100)
A:
NA
C2:
PF0016924=PH=PD(12.4=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGTGGGCTGCCTAAACTA
R:
AGGTTGAACTGTCCTGCGAAG
Band lengths:
246-2219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development