RnoINT0124525 @ rn6
Intron Retention
Gene
ENSRNOG00000006167 | Rasal3
Description
RAS protein activator like 3 [Source:RGD Symbol;Acc:1309019]
Coordinates
chr7:14410732-14411039:-
Coord C1 exon
chr7:14410913-14411039
Coord A exon
chr7:14410831-14410912
Coord C2 exon
chr7:14410732-14410830
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTGAATCCCGCTCCAAACAGGTA
3' ss Score
8.61
Exon sequences
Seq C1 exon
ACCCTCCAGTGCTCTTGGTTCCAGAGAATCGCTGGCCACACTCTCTGAGCTGGACCTAGGCGTTGAGAGGGATGTGAGAGTCTGGCCGCTGCATCCTAGCCTCCTGGGGGAGCCATATTGCTTCCAG
Seq A exon
GTAAATGAGGAACCCACTTAGCCTCTACTACCCTTGGCACCGTCTCAGCCGCTACTAAACAACTGAATCCCGCTCCAAACAG
Seq C2 exon
GTAACGTGGGCAGGTGGGAGCCGCTGTTTCTCTTGTCGCTCGAGCGCTGAGAGAGACCGTTGGATTGAGGACCTTCGTCGGCAGTTCCAGCCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006167:ENSRNOT00000066722:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(44.7=100)
A:
NA
C2:
PF0016924=PH=PD(30.9=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTGCTCTTGGTTCCAGA
R:
GCTCGAGCGACAAGAGAAACA
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]