GgaINT0124827 @ galGal3
Intron Retention
Gene
ENSGALG00000001419 | DAB2IP
Description
NA
Coordinates
chr17:9282628-9285899:+
Coord C1 exon
chr17:9282628-9282781
Coord A exon
chr17:9282782-9285800
Coord C2 exon
chr17:9285801-9285899
Length
3019 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCTGTTCCTTTCCCTGTAGGTG
3' ss Score
12.43
Exon sequences
Seq C1 exon
ATCCCATCTAATGCCGAGGCTGAAAGAATCGCGCTCCCACGAGTCTCTGCTCAGTCCCAGTAGTGCTGTTGAGGCTTTGGATCTCAGCATGGAGGAAGAAGTGGTCATCAAGCCGGTCCACAGCAGCATCCTGGGACAAGACTACTGCTTCGAG
Seq A exon
GTGAGGAGCACATCTGTACGCCCTGTAACAGAGCTGGCTGGGGAGCCAGGCATCGGGTTGTGCTGTGGGCTTTTGCTGTTACAGAGCATTTCTGCTCTGAATCGTTACACAGATACCATTCCATGGGCAGAAAATTACTTCATCTTTCCAAGGAGGAACATATCCACAAATCAGAGCGATGAGCTCTTTGCATTGTAACCATTGTCACAGCAGGGCATGCAAGGCACAGGTGCTGGACTGCTTAGAAATGAGTATTAGCAGAGCATAAACGTGTAGTTTATGTTCATGCAGATATCAGAAGGTGCTGTGCTCTATTCTGTGTTTACGGAGACATTATCTGTGGTCACAAGGACTGCTTTTGTCAGTGGGAGTGTTGAGGACTTTGTCTAGAAAACTCAAACTTCACTTGTTTGTATTTTAGGGTATTTTTTACGTGACTATATGCGTTTTGTAATGGCTCATGGCTAGGTCTTCACTAGCAGGAGGCATTGGGACACGTACAAACAAGCCTGTTGTTAGGTAACACAGTGCTATACCTCTTGGGAATAGCTTGTCATGCATCATGGGTGGAAAAGTATTATTACTTACGGCAGTCTAGAATATAGAATCAGGAAATGGTTTTCTTACAGTAATTAGGTGGTCAATACTTGTGTTGAAGAGAAGGTAACCTGGTTGTACTGGGACATCAAAGAGCAGGTGAAACAGGGCAGTGCTGTGCTGTAGGGGTTGATGGGGTTGCAGGCATTCCTAGGATGGGCAGAGCTACACAAAGCCAGCTGTGTCAGTGTCCAGGAGTCAGACAGGGCAGAGGAAGATTTCTCTGAAATTAGTTTAGAATTAGGTAGAACTTAGTTTGAAATAAATGATTTCAAAGATCATCTTAACATTTAAGCAGGTAATGCTGAAAAAGTCTTAAGAAAGAAATAAAAAAAAAAAAGCCCCAAACATGAACTCTGAAGTTGAGGGAGTGGGCTGAGATGCAGATTCTCCAGCGCTGTTCATTCTCTGTAGAACTGAGCAAGTGTGGCAGGTCAGGAGAGAACAGTTCTGTAAATTATATGGCCTCCATTACATTCCACTCAAGAAAGATAAAATGAAGCTAGATGGAAAATAGATGTGACATCCATAATATAAGAGTTGTTTATCAATTCTGTTCAGCACACAAGAGCAGAGGAAGGGATATGAACAGTACTTGAAGAAAGTTGACTGAGAGGGAAATTACACAAGTCGTGCACTTGTAAGGAGGAGGAAAATTCCATTTTTAAGCGAGTTGGATAAAGGAGAGTCATCCAGAAAAGAGAACACGTTAATTGCTGTTCTGCAGATCCTGCAGAGGAAGGGAAGAATGCTGGGAAACAAAAGGGACATTGATCTGTAGCTGACGGTTACTCATCAGCAGGCTCCAGAGGGAAGGGCTTAGGTGAGAGCTAAACGGCGCACTGTGTTACTGCCTTGGTCTTGCATCTCCAGAGAGGCTCCTTCAAATACTGCGCTAGGTGGGATGTGAAATGAGTTAGCAGATCTCTCTGGATCCCCGCCGGGTGGTGTGCGGGCGCAGTGGTGCAGACCCAGCGCTGTGTGCTGCATCGCGTGGTTCTCCGGGCCAGGAGTGGTGGAACTGCGCGAGCGTTATCCCCTCCTCGGTGCCTGACGGTTGCCTTGGGTTGTTTTGCTTTGGAGAAGGCTTTAAGGTCTGTGAAACTTGCTTTCTTACTGACTTGCTGAGTACGTGGAAGTCAGTATTTTCTTGTTTTCCCCACTGACTGTTTTTGAATTGATTCAACATCATCATCTTTCTCCTTATAAGACCTTCCAGTCAGCAGAATCATCCAGTGCCCCCGCAGGGGCTGCATGCACGAGATATACAGCGAGCAGCTCAGCCTGCTGAGGGACACTGCGAGTCCGATCTCCCAGAGCCTATTCCTGGCTCTGCTGTTTGTGGGATCCTGGTGACCCGGAGCAGGAGTGGCAGTCAGAATGGAAAGGTTCTGTTCCTGTGTTAGCAAACCAAAGTCCTGTGTTTATGGGCAGAAAGAAAAGGCTGCTGCAGGGCTGTAAAACCATGCAACCTCATCCTGGCCTTTCCTTGAGCAGGGAGGATGTAGAGGAGAGATTTAGCACTGCTGGGGAAGCAGTCACCATTGCTCATGTGGCCCTCCAGCCCCTGCCTGCCATCATGGCTCTGCTGCCCTGGTGTGTCCTCCTGCAGGTGGCTGTACTGGTACTGTCAGTGTGAGCCTTACCCTGGAAAGACATCTGAATGCTTCAGGTGAAACAGCTGTTGTGTGAAGTGGAAGTTGGTGTTCATCCTCTGGTGCTGCACCACTGGGGCTCCTTGTAGTGCACTTTGAGTATCCTCAAAGCAAACAGTACTGAAGACATTGTAAAAATGGCAAGATTTTATCTGACTTGAGGGGTCACCCACTCATGAGTTTTATTAACAGAGTTTATCCTTATCCTTGTAGTATTCACAATCTTGTTGAGATGAGAATACTTTCTTTATTAAGATAATCAGTATCTCATGAAGATCACCAATCCCTATGATGCTCAGGTCAGAGCTCAGGACCAAAAATGGTTTTTCCCACTCTGGGGTCCAGAAGATGCTCTTCTGCAAACAAGGAATGGGTGATGGCTGCTGGGAGCTTCGGGCTGAGTCTGGAGGAGTGCCGAGTGGTTGCAGTTTGCCTTTAGTTCATTTAAGGATTTTTCACTCTCTCTGTCGTGAAACGTGGTGGTTCAAAGCATCACATGCACAAGGCCCATTATCTTGTGTTTTCTGGTGTGGAAGAGGAGAAGTAATTGGAATTTGCTTCCATGATTATTTCTGTGACACAGAGTTGCCCTGTCTTTCTGCTGGCCTTCGGGGGCTGTTGCTTCATGCTTGGGTAAAGCTGTTTACTTAAAATTTAAAAATAAATAAATAAAAACAAATCCCCATCACCTTTCCTTACTCCCCTCTCCCCCAAATCACAGTCTGCAGTGTGCTGGTCAAGACATAATCCTGTTCCTTTCCCTGTAG
Seq C2 exon
GTGACGACTTCATCAGGAAGTAAGTGCTTCTCGTGTCGTTCTGCAGCAGAGCGAGATAAATGGATGGAAAACCTGCGGCGTGCCGTGCACCCAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419:ENSGALT00000002162:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=NA C2=0.242
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(46.4=100)
A:
NA
C2:
PF0016924=PH=PD(26.4=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]