BtaINT0046519 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008232 | DAB2IP
Description
Bos taurus DAB2 interacting protein (DAB2IP), mRNA. [Source:RefSeq mRNA;Acc:NM_001144082]
Coordinates
chr11:92638607-92640463:+
Coord C1 exon
chr11:92638607-92638760
Coord A exon
chr11:92638761-92640364
Coord C2 exon
chr11:92640365-92640463
Length
1604 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
ACACTGTGCCACCCCCGCAGGTG
3' ss Score
10.46
Exon sequences
Seq C1 exon
GTCTCATCTGATGCCCAGGCTGAAAGAGTCTCGCTCCCACGAGTCCCTGCTCAGCCCCAGCAGCGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAGGAGGTGGTCATCAAGCCCGTGCACAGCAGCATCCTGGGCCAGGACTATTGCTTCGAG
Seq A exon
GTGGGTCCGGGGCGGCGGGGTGGGGCAGGCCCAGGTGTCCTCCCGCAGGAGGCCAGTTCTCCGTCAGCTGCCCTCCTGGAGGGTCCTGTGGCCTCCACTCTTTGGGGGCAGTGGCCAGAAACCGTCAGTGCTTTTGGACTCCCAAGAGACCAGGTGGAGCTGGGAGATGGGGGCTTCCTTCCTGCCCTGTGGTCTTCTTGGAGACTGACCAGCACTGTTCCCCACGCGGGGATGTGCAGGAGTCCCGAGCGGGTGGAAGGGACGTCCAAGGCATGTGTGGAATGGCTCAAGCCTGCTCACCTCTCTGTGAAACCCCTCCAGTGTGGTGTGGGGCCGTGGAGAGAGCACCCCCTTCTCTGGCCTCTGCATGGTGAGAGCCAGGATCTTTCCTGCCCCGCCTTCTGTGACCCGAGGTGTGAGGGCAGAGGGGGTACCACTCCACCCGGCCAGGCTGTTCCCTGGGGATCCCTGTCCAGTGCCTCCTGTAGACGGGGAATCTGGCCCAGAGATGTCAGAGCTCACGAGGCCAAGTCAGGACCCGGGTAACTAATGTCGCAGGTGTTCCTGGGAGTTCCTAATTGCTTCTCTAATTATTCGTTTTCTCTTCCCACCTCTGTCTCTGGGAAGCCTCCCACCCCCGACGATCTTGCATAATTAGGGGAGCTTTCCGATAGAGGCATGAGCATGGAACTGCTGTGGCAACCTCCTGGCGCCCCCAGCTCCAGGGGAGACTGGGGTGGTACCTGGCACCTTGCCCCAGCCCTGTGCCCCCTTGGGTGCTATTTCTGGTTCAGGACTCCTGGCCACACTGGAATCCTGGGCTCTGACTTCTCTGTCTGGGGTGGGGGAGAGCCTGATGCTAGTTGCCCACTTGTGCACAGCAGGGGATGCTGTGGCTTGTATGGCCCATGAATGGCTGGATAGGGCCCTCAGCAAGGTGCAGGGGACAGCGGGACAGAGTAGGAGCAGCTTGGGCTGGACTTCCTCTCCCAGAGAAGATTGGAGGATGAGCAAGCCAGACAGGGCAGGGAGGGTAAGGGTTCCAGGACAGACCCCAGGGCCCAGCACACCCAGAGAGACCATTCTCGGTTCTCTAGTCCGGCCTCAAATAGGTTAGCCCTTTGTGACCACCACTGCCATCACATTCAGCAAGAGAAGCATCGTCAGCAGGTGTCAGCTGAGGACTGAGGCGACCCTCAGGCCGACCCGGGGCTGTCTCCGGGGTGCCTCTGGCGCCAGCGATAGAGGGAGACCTCAGTGTCCTCCGATTCATGCAGAAGCTGTGCCTTCTGTCTCCACCATCTCCAGGAGAATGAGGGTGGACTCAGAGAGATGCTTTCCTGAAGACAGAGAGCCCAGAGGCAGGACTCAGGCTCCAGTTGGCACGGGGCTGGACGCTGTCCTGTCACCATCCTGCTCTGGGACCACAGGCCTCTGGGCACCACCTGCAAACAAAATCCAGGGGGCACCGTGCATCTTGTCCTGCCTCCTCCCTGAGGCTGCGGTGCCGTCAGACCTGGCAGCCGGGGTCCCTCCTCCCACCCCAGCCCCGGAGGTCCTCCATCGTGCCTCCCCCTCCCCGTGACACTGTGCCACCCCCGCAG
Seq C2 exon
GTGACGACGTCCTCAGGAAGCAAGTGCTTCTCCTGCCGGTCAGCAGCTGAGCGGGATAAGTGGATGGAGAACCTGCGGCGAGCCGTGCATCCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008232:ENSBTAT00000032823:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.182
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(42.9=100)
A:
NA
C2:
PF0016924=PH=PD(24.4=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCCAGGCTGAAAGAG
R:
CTTGTTGGGATGCACGGCTC
Band lengths:
246-1850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development