MmuINT0046473 @ mm10
Intron Retention
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35707648-35708912:+
Coord C1 exon
chr2:35707648-35707801
Coord A exon
chr2:35707802-35708813
Coord C2 exon
chr2:35708814-35708912
Length
1012 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AACACCATCTTGTTTGACAGGTG
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTCCCATCTGATGCCAAGGCTGAAGGAGTCTCGGTCACACGAGTCCCTGCTCAGCCCCAGCAGCGCAGTGGAGGCCCTGGACCTCAGCATGGAGGAGGAGGTGATTATCAAGCCCGTTCACAGCAGCATCCTGGGTCAGGACTACTGCTTCGAG
Seq A exon
GTGGGTGTCTACCACAGCTCTACCCTACTCAAATTGGCCAGGCCTGCTCCGCAGACTCCTGGAGGGCTCTATGACTCTGGCAGTCATAGACTTTACAGGCTTTTGGGAACAGTCTACAATTTACTCCAAGTTATATACTGTCCTCACTCCCAATAATTATACTTTGGGGGGAACCCTCTGGTAGAGGAATGAGCCTAGTAATGACAACCCAGTGGAGTCTAATGTGGAATCCTCTTGGCATCTACTGTATTCTGTGACCCTTTATTCTTCTGGGTTAAGACTCAGGCCATGTCACACTGGCTCTGGATTCAAGTGTCCATATCTGGGACAGCCTGAGAGGGTTGGGGTCTACCCTCTTGTCTCAGCAAAGGCTGCTACAGAATGATCACACCTACTAGTGCCTAGATGTGGGTCTGCCTTCTCCAGTGGAACCTGCATTTTGCTGGGAGTAGCCTGGTCAGTGAAGGCAATTCTGGCCAAATTCCTCACACCAGGAAAACATTGGGGTTGCAACTGGGAAGTGAACAGGATTCATACCAGCAGTGGAGGGTGAAGGTCAGCTCTCTTTTCTCTAGATTAGCACTTGTTAGCATTTTATGATGTTGTTGTCATTGTTGGTTAGCAAAGGAAACCCCAGGAGGGGTCTGTTTAGATAAATCTGACCCTTGCTTATCTCCGGGAACCTATGGTCTGCCTTAGGGAGGCTGTGCTTGGGTATGTGTGCACTCTGACTCTTAACAGGCACACCGTTCTGCCTCTCTTAGGAGAGGGAGGCCAGGGATGAGGAAGCAGGCCCCAAAGCCCATAGCAGAAGCCTCGCCACTTTCCCACTGCTGACCTGCTGGGACACAGTGGGGTCCAGTGTGCCACCTGTGGTTCATGGGGTTTCTGGCAGCTCCTCCTTGCCTCTTCCTGTGGCTGCTAGGCTGCTATGCAGTCATGGTGGCCTCGTGCTTTCTGTAGGTGTCCAGCCTTGTGGTCCCTTCCCCTCTAACACCATCTTGTTTGACAG
Seq C2 exon
GTGACAACATCATCAGGAAGCAAGTGTTTTTCCTGCCGGTCAGCCGCTGAGCGCGATAAGTGGATGGAGAACCTGAGGCGAGCAGTGCACCCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883:ENSMUST00000112983:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.198
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(61.7=96.2)
A:
NA
C2:
PF0016924=PH=PD(35.8=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCAAGGCTGAAGGAG
R:
CTTGTTGGGGTGCACTGCTC
Band lengths:
246-1258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types