MmuINT0046473 @ mm9
Intron Retention
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled homolog 2 (Drosophila) interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35563168-35564432:+
Coord C1 exon
chr2:35563168-35563321
Coord A exon
chr2:35563322-35564333
Coord C2 exon
chr2:35564334-35564432
Length
1012 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
AACACCATCTTGTTTGACAGGTG
3' ss Score
9.02
Exon sequences
Seq C1 exon
GTCCCATCTGATGCCAAGGCTGAAGGAGTCTCGGTCACACGAGTCCCTGCTCAGCCCCAGCAGCGCAGTGGAGGCCCTGGACCTCAGCATGGAGGAGGAGGTGATTATCAAGCCCGTTCACAGCAGCATCCTGGGTCAGGACTACTGCTTCGAG
Seq A exon
GTGGGTGTCTACCACAGCTCTACCCTACTCAAATTGGCCAGGCCTGCTCCGCAGACTCCTGGAGGGCTCTATGACTCTGGCAGTCATAGACTTTACAGGCTTTTGGGAACAGTCTACAATTTACTCCAAGTTATATACTGTCCTCACTCCCAATAATTATACTTTGGGGGGAACCCTCTGGTAGAGGAATGAGCCTAGTAATGACAACCCAGTGGAGTCTAATGTGGAATCCTCTTGGCATCTACTGTATTCTGTGACCCTTTATTCTTCTGGGTTAAGACTCAGGCCATGTCACACTGGCTCTGGATTCAAGTGTCCATATCTGGGACAGCCTGAGAGGGTTGGGGTCTACCCTCTTGTCTCAGCAAAGGCTGCTACAGAATGATCACACCTACTAGTGCCTAGATGTGGGTCTGCCTTCTCCAGTGGAACCTGCATTTTGCTGGGAGTAGCCTGGTCAGTGAAGGCAATTCTGGCCAAATTCCTCACACCAGGAAAACATTGGGGTTGCAACTGGGAAGTGAACAGGATTCATACCAGCAGTGGAGGGTGAAGGTCAGCTCTCTTTTCTCTAGATTAGCACTTGTTAGCATTTTATGATGTTGTTGTCATTGTTGGTTAGCAAAGGAAACCCCAGGAGGGGTCTGTTTAGATAAATCTGACCCTTGCTTATCTCCGGGAACCTATGGTCTGCCTTAGGGAGGCTGTGCTTGGGTATGTGTGCACTCTGACTCTTAACAGGCACACCGTTCTGCCTCTCTTAGGAGAGGGAGGCCAGGGATGAGGAAGCAGGCCCCAAAGCCCATAGCAGAAGCCTCGCCACTTTCCCACTGCTGACCTGCTGGGACACAGTGGGGTCCAGTGTGCCACCTGTGGTTCATGGGGTTTCTGGCAGCTCCTCCTTGCCTCTTCCTGTGGCTGCTAGGCTGCTATGCAGTCATGGTGGCCTCGTGCTTTCTGTAGGTGTCCAGCCTTGTGGTCCCTTCCCCTCTAACACCATCTTGTTTGACAG
Seq C2 exon
GTGACAACATCATCAGGAAGCAAGTGTTTTTCCTGCCGGTCAGCCGCTGAGCGCGATAAGTGGATGGAGAACCTGAGGCGAGCAGTGCACCCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883-Dab2ip:NM_001114125:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=NA C2=0.224
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(61.7=96.2)
A:
NA
C2:
PF0016924=PH=PD(35.8=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCAAGGCTGAAGGAG
R:
CTTGTTGGGGTGCACTGCTC
Band lengths:
246-1258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: