RnoINT0044837 @ rn6
Intron Retention
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:15037145-15038365:+
Coord C1 exon
chr3:15037145-15037298
Coord A exon
chr3:15037299-15038266
Coord C2 exon
chr3:15038267-15038365
Length
968 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AACACCATCTTGTTTGACAGGTA
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTCCCATCTGATGCCAAGGCTGAAGGAATCTCGATCACACGAGTCCCTGCTCAGCCCCAGCAGCGCAGTGGAGGCCCTGGACCTCAGCATGGAGGAGGAGGTGCTTATCAAGCCTGTTCACAGCAGCATCCTGGGTCAGGACTACTGCTTCGAG
Seq A exon
GTGAGTGTCCACCACAGCTCTACCCTGCTCTAATTGGCCAGCTTGCTTGGCAGATTCCTGCAGTGCTCTGTGACCCTGGCAGGACACAGGTCTTTGGGAAGTCTAGAATTTGCTCCAAGTTACACACTGTTCCACCCCCACCAATCATACTTTGGGGGAACCCACTAGTAAAGGAGTGAATCTAGTAATGACAACCCAGTGGGGTCTAATGTGGCATCCTCTTGGCACATATTCTGTGCCCCTGTATTCTTCTGGGTTAAGACTCAGACTAAGTCAGACTGGCTCTGGACTCAAGTGTCCATATCTGGGACAGGCTGAGAGGGTCGGGGTCTACCTTCTTGCCTCTGCAAAGGCTGCTACAGAATGATCACACCTTCTAGTGCCTGGATATGGGTCTGCTTTCTCCAGTGGAGCCTGTACGTTGCTGGGAGCGGCCTGGTCAGTGAGAGCAATTCTGGCCAAATTCCTCACCCCAGGAAAACATTGGGGTTGTAACTAGGAAGTGAATAGGATTCATGCCAGCAGGGGAGGGGAAAGGTGAGTTCTCTTTTCTCTGGACTAACACTTGTTAGCTTTCTATGATGCTGTTATCACTGTTGGTGAACAAAAGGAAACCCCCAGGAGGGATCCGTTTAGGACAGATGTGACCCTAGCTTATCTCTTGAGAACCTATGGTCTGCCTAAGGAGCCTGTGGTTGGCTGTGCATGCATCCTGACTCTCTTAGAAGAAGGAGGGCGGGGATGAGGGAGCAGGCCCCAAAGCCCATAGCAGAAGCCTCACTCCTTTCCTACTGCTGACCTGTTGGGATACGGTGGGGTCCAGTGTGCCCCCTGTGGTTCAGGAGGTTTCTGGCAGCTCCTCCTTGCTGCTTCCTGTGGCTGCTGTACAGTCATGGTGGCCTCGAGCTTTCTGTAACTGTCCAGCCTTGTCATGGTCCCTTCCCTTCTAACACCATCTTGTTTGACAG
Seq C2 exon
GTAACAACATCATCAGGAAGCAAGTGTTTCTCCTGCCGGTCAGCCGCTGAACGAGATAAGTGGATGGAGAACCTGAGGCGAGCAGTGCACCCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226:ENSRNOT00000080760:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=NA C2=0.244
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(38.6=100)
A:
NA
C2:
PF0016924=PH=PD(22.0=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTGATGCCAAGGCTGAA
R:
CTTGTTGGGGTGCACTGCTC
Band lengths:
250-1218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]