HsaINT0044764 @ hg38
Intron Retention
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr9:121757013-121758996:+
Coord C1 exon
chr9:121757013-121757166
Coord A exon
chr9:121757167-121758897
Coord C2 exon
chr9:121758898-121758996
Length
1731 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GTCTTGCCTGCTCCCCACAGGTG
3' ss Score
11.33
Exon sequences
Seq C1 exon
GTCCCATCTGATGCCGAGGCTGAAGGAGTCTCGCTCCCACGAGTCCCTGCTCAGCCCCAGCAGTGCGGTGGAGGCGCTGGACCTCAGCATGGAGGAAGAGGTGGTCATCAAGCCCGTGCACAGCAGCATCCTTGGCCAGGACTACTGCTTCGAG
Seq A exon
GTGGGTCCCATCACAGGGGTTGGGGTGGACACCCCATCCTCTCCTGGCCTGGCTGGTCTCCTCCAGACATCCTCCTGGAGTCCAGTCTGCTGTGGCCTCAGCAGGGGCCAGGGTCTTGGGGACAGTGGCTAGTAGTTACCGATAGCTTTCAGCTCCTAAGAGACCTGGTGGAGCTGGGGTGGAGGCTGTCCTTCCTACTCTCTAGGTTCTCTGGAAATGGGCCAGCACCTGTTCTCCATGCTAGCCTGAAGCTGCTGGGGCCCCCAGTGGATGACAGTGAGTAGGGGAAAAGCCTGAATTTCTTAAGCACCAGAGCCCATGTCTTAGAGCCTGCTCACCTCCCAAATGCAGTGTGGATAGCAGAGAGTCTCCCCTTGTCTGGGCCTGTTTCCCACTGTGAACAATGAGAGCCCAAATCTGTCCTGCCCTGGCATTCTGCGACCTGAGGTTTGAATGCAGAGAGCCAGTGACCCACCTGGGGATGACCTGTCCAGTCCCTCATAGGAAATGGGGGATCTGAGGCCCAGAGAAGGCACAAAGACATCAGAGGTCACACAGCAAGGCTGAGACCAAGCCGGGAGCAGGGTTACTATTGTTGCAGGTGTTCCTGGGAGTTACTAATTGCTTCTGCAGTTATTCATATTGCTTCCTACCAGTTTCTGGGAAGATTCCTACCCCCAATAATCATGCATAACTAGGAGAGCTCTCTTGTAGAGGAATGAGCCTGGTAATGAAAAGCAGCCACTTGGGGACTAGTGTGACAATCTCCTGGCACCCCCAGCCCTGGGGAAAAAACAGAATGGTGCCTGGCACCTGCCCCATACCCTGTGCCCACTGGGGACCATTTCTGGTTCAGGACTCCTGGCCAAGCCAGGCTTGATCTGGGTTCTGACTTCCTTGCCAGGGATAGGGTGAAGATGGCCCTGTCTGCTGGTTCACAGCAGGGGGTTCTGTGGAGGGTGCAGGCCCTCGAATGCCGTGTGAGGAGTGTGCTTCCCCTGCAGAGACCCGGGTCTGCTGCTGGGGACAGTGGAAACACACAGCAGGAATTGCCCGGACTGGCTCCCTTACCTGGCAGGAGATGTCTAAGCTGGACCAGAGGTTGAGTGAGAGTCAGACAGAGAGGGAAGGAGAAGGGTCAGGGACTGGGGACCCTAGGGCCTGGCACATCCAGACAGTCCGAGTCTCATTTCTCCAGTCTGGCATAAAAAATATCAGGCTTATATTACCATTGTTGTCACTGCTGCTTGACGGAAGAGAACCCTCAGAGTTGTCAGCTGAGGACTGAGGGGATTCTGGTACCTACCTTTAGTTGTCTCCTTGGTTCTTGTGGTTCCGCCTTTAGGGAAAGTACGCTCGGGTTAAGCATTGCCCTCTGACCTGGGCAAGGTCTTCGTTCATTCCCTCTTCCCATCTCAGGGAGAGGGAGGTTAGAGTTAGGAAGATGCTTTCCTATTGGACAGAGGGCACTGAGGGACGAGTGAGGAGCCTGCTCGTGCAGGATGGGGCCACTCTCCGGCTGCTGACTTGCCCTGGGACAGTGGCTCTCAAGTGTACCACCTGCAAAACATGAAGTAGAGGCGTCATATGAGCCTTGTCCTGGCTCCTTCCTGAAGCTGTGATGCAGACCTGATGGCCAGAGTCCCCTGAGCCTCCAAGGTCTTCTTCCATCACTGCCTGCCCTTGCTGTGGTCCCTTCCCTCATAACACTGTCTTGCCTGCTCCCCACAG
Seq C2 exon
GTGACGACGTCATCAGGAAGCAAGTGCTTTTCCTGCCGGTCTGCAGCTGAGCGGGATAAGTGGATGGAGAACCTCCGGCGAGCGGTGCATCCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848:ENST00000394340:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(57.5=87.5)
A:
NA
C2:
PF0016924=PH=PD(24.8=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGATGCCGAGGCTGAAG
R:
CTTGTTGGGATGCACCGCTC
Band lengths:
249-1980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development