HsaINT0137730 @ hg19
Intron Retention
Gene
ENSG00000105122 | RASAL3
Description
RAS protein activator like 3 [Source:HGNC Symbol;Acc:26129]
Coordinates
chr19:15569139-15569466:-
Coord C1 exon
chr19:15569340-15569466
Coord A exon
chr19:15569238-15569339
Coord C2 exon
chr19:15569139-15569237
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGGATTCTCCATCCCAACAGGTA
3' ss Score
9.79
Exon sequences
Seq C1 exon
ACCCCCCAGTGCTCTGGGCTCTAGGGAGTCGCTGGCCACACTCTCTGAACTGGACCTGGGTGCCGAGCGGGATGTGCGGATCTGGCCACTGCACCCCAGCCTCCTGGGGGAGCCCCACTGCTTTCAG
Seq A exon
GTAAGTGTAGACAGTCCACCTCGATTCCACCTCAGTCCCACCTCCCACCCTTTGGCTTCACCCTTGGCCTCGATCACACCGTTGGATTCTCCATCCCAACAG
Seq C2 exon
GTAACCTGGACGGGTGGAAGCCGCTGCTTCTCTTGTCGCTCGGCCGCTGAGAGAGACCGCTGGATCGAGGACCTTCGTCGCCAATTCCAGCCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105122-RASAL3:NM_022904:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(48.3=100)
A:
NA
C2:
PF0016924=PH=PD(33.3=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTGGGCTCTAGGGAG
R:
CTGGGTGGGCTGGAATTGG
Band lengths:
218-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)