MmuINT0132061 @ mm10
Intron Retention
Gene
ENSMUSG00000052142 | Rasal3
Description
RAS protein activator like 3 [Source:MGI Symbol;Acc:MGI:2444128]
Coordinates
chr17:32397310-32397620:-
Coord C1 exon
chr17:32397494-32397620
Coord A exon
chr17:32397409-32397493
Coord C2 exon
chr17:32397310-32397408
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTGAATCCCGCCTCAAATAGGTA
3' ss Score
6.45
Exon sequences
Seq C1 exon
ACCTCCCAGTGCCCTCGGTTCCAGAGAATCGCTGGCCACACTCTCTGAGCTGGACCTAGGTGCTGAGAGGGACGTGAGAGTCTGGCCACTGCATCCTAGCCTCTTGGGGGAGCCCTACTGCTTCCAG
Seq A exon
GTAAATAAGGAACCCACCTTAGCCTCTGCTAAACCCTTGGCACCATCTCAGCCTCTATTTAACCACTGAATCCCGCCTCAAATAG
Seq C2 exon
GTAACCTGGGCAGGTGGGAGCCTCTGTTTCTCATGTCGCTCGAGCGCTGAGAGAGACCGTTGGATTGAGGACCTTCGTCGGCAGTTCCAGCCGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052142:ENSMUST00000063824:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(43.8=100)
A:
NA
C2:
PF0016924=PH=PD(30.2=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTCTCTGAGCTGGACCT
R:
CGAAGGTCCTCAATCCAACGG
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types