BtaINT0123201 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023891 | RBM20
Description
RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
Coordinates
chr26:31665794-31673994:+
Coord C1 exon
chr26:31665794-31665928
Coord A exon
chr26:31665929-31673872
Coord C2 exon
chr26:31673873-31673994
Length
7944 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
CATCCCCCATCCTTCTGCAGGGG
3' ss Score
10.67
Exon sequences
Seq C1 exon
AAAACTCCAGGTACTCAGAAATGAAATCTCTGGACGTGAGGTCACTGGAAGATGCTGAAGTGGAGCTGAAACAGCCCCTTTCTTTGCCTTCCTGGGAACCAGAGGATGTGTTCAGTGAACTTAGCATTCCTCTAG
Seq A exon
GTGGGTGAGATACTCAGTCCTTCCTGAGAATTCAGTTCCAGGGGACGATAGTTCTGTAATAATGTCTAAGAGCTTGAGAAGGCTGTTCGTCATTTTGTTGTAGTATTAATGTCTGATGCAATCACCCAGATTAACCTGCAGCTTTAAAGTTTCTTGCAATTTCAGTCTCCCATAGTAGACCAAGATAGCTCATGGGGCCAGGCTTTGAACGGCACTGCCCTAGGAGCCAGAGCAAAGAGACTTGTTTTTCCTGTCAGGAAATGTTTTATTCCTAACCGCACAGCCCTTATTCAGCCCAGGTAGTGGCGGCCGACCAGCTGCCACAGAGTCAACAGAAATGCCCTGCTGGCCCCAGCACTTCTCCAAACAACGCTGCTTTTTTTTTTTTTTTGCTCTTTGAGGGACTAGCTTCTCTGAGGCAGTGATACTGAATAGACTGTGTTTAGGGGACTTCCCAGGTGGCTCAGAGGTAAAAGAATCCACCAGCCAATGCAGGAAACGCAGGAGACGTGGGTTCAATCTCTAGATCAGGAAGATCCCCTGGAGGAGGAAATGGCAACCCGCTCTAGTATTCTTGACAAAAAAATCCCATGGATAGTCCATGGGGTTGTAAAGAGTTGGACATGACTGAGCAACTGAGAACACACTCTATAGTTGATAGAGGGTCCCTGGGTCCCTGTCCTTCCCATGTTGGTGACTGCGTGTCCTCAGACAAGTCATAACCAGGAATTTTTTTTCCAGTTACAGCAGGTCCTTCAGCTTCCCTGGGAGCTCAGCTGGTAAAAATCCACCTACAATGCAGGAGACCCCTGTTCAATTCCTAGGTTGGGAAGTTCTCCTGGAGAAGGCACAGGCTACCCACTCCAGTATTTATGAACTTGTGGCTCAGCTGGTAAAGAATCCACCTGCAATGTGGGAGACTTGGGTTCAATCCCTGGGTTGGGCAGATCCCCTGGAGAAGGGATAGGCTACCCACTTCAGAATTTATGAGCTTCCCTGGTGGCTCAGATGGTAAAGAATTTGCCTGCGATGCAGGAGACCTGGGTTTGATCCCTGGGTTAAGAAGATCCCCTGGAGGAAGGCATGGCAACCCACTCCAGTTTTCTTACCTGAAGAGTCCCCATGGACAGAGGAGCATGGCGCTATAGCCCATGACACAACTAATCACAGCATGGCAGGTCCTTCATTAACAAGTCGATGAGCCCCAAGGGAGTTAGTCAGCATGGAGGCTCACACTTTCCATCAAGTTTTCTTTTTTCCTTTTCATCTGCTGTATAAAAATCCCTTATTTTTTTTCTGTCTTCCAGTGTGCCATTTAGTTAGATGCAAAGAGCAAACTTCCTTTTTTTAAAAAAAAAAAAAAAAGAAGAAGAAGGGGTTTGCTACATAGCATCCAGCATGCCCCAGGACAAAAATTAAAAAAAAAAACAAACGGAAATACGTACTGACCTTAGAATGAACTAAGATGATTGCGAGAAGGCCCTGGGTTCTGGAAAATAGTTGCAAAGGCTGCCTTTCAGGAAAAAGGTGCCAGACAGCCAGCAGCCCTTCCTGGATAATGTGGCACTGCGTGAGGCACTCGGGGCAGGGGCACTGAGAAATGGAACACAAGTCTCTCGGCATCCAGGAGCTTGGAATCTGTATGATAGACACAGGCAGAAATTAAGACTAAATTCTGCTGCTTTATAATTCATGTCTTATTTTTATTATAAAAAGTGTGAAAGATTATTATAAATTTATCACCCATATAAAGTAAACATTAAATGTTGTTTCTCTTCTCTCCAGTCTCTCCCCGTCTCCGAAGGTGACCACAGTCATACCCATGGATAGTTTTTCTCCCACAAAAACAGGATCAAACTATACACACAATGTTATGCAGTTTGCTTTTATACCTTAACAGTGAATCTTAGAGCTCTCTTCACATCAAATGCATTCTTCTTAACTACTGCAAATATTTTTTCTTAAAAGCTGTACCATACATTACCGATACATCTCTCTACTGGTGAACATTCAGAATGTCTTTAATTTTTTTTTTCCATTAAAAATTAGATTGACAACAATACTAGGTAGAATATGATTTCCATCATAGTTTAGCACTGATCAATAACCAAACATTTCACATATTTCTACAGAATATATTCTTACATTCTAAAAGTATTGTATATTTGAATGGCACTGCCCTGGGAGCCAGAGCAGAGAGACTTGTTTTTCTTATCAGGAAATGTTTTTCCTGTCAGGTATATACTATATCACAAACTTATTCCTGTTTTCCCATCTTTAAAGTCAATAACGCCTTTCTCTTACGTATTTACTTCTAAGGATTGTAATATAAAATTAAGTAAGATATCCAATGTTAGGAATGTTAAGCAGCCAAGAATAAAAGAACAGTATAAGTGAGAAAGTACAAAGTAACATTATTTATGAAAAATTAAAATTATTAATTTAAATGCTATACAAGTTAGACTTTTATTTTTTTCATTTACCATTGAACTCACAAAACACCTGTGGGGTTGGTAATATTTTCAGCCCTATTTTACAGGTAAGAAACGAGATGCTGGTGGTTTAGTCGCTACGTCGTGTCTGACTCTTGTGCCCCCACGGACTGCAGCCCACCAGGCCCCTCTGTCCGTGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATTTTCTCCTCCGGGGGATCTTCCCGATCCAGGGATCAAACCCACGTCTCCTGTATTTTAGGCAGTTTCTTTACCACTGAGCCACCAGGGATCTAGGATGAGAGGCAGGTTGCAGAGCTGATGAACAGCCCTTTGACTCCTGGCCCCGTGCTCTTGCTGCCTGGGCACCTCCCACCTTCCGCACATGCTGCCGCCTTTGTGTGTGAACCGGTTCCTGCTGGATAGCACGCTAGCCCAGGGGAGAGGGGGCTGTCCATGCATCTTTGCATTTCACATTTTCATAATTACCACTAAATCGCTATCCAGAAAGATTATACCAGTGTTCTTGAGAGTACGGTTTCTCCACATCCTTGCCAGCTTTGGATCTTAGCAGTTTTTAATCTTTACCAACCAATTGGAGGAAAATGGTAACTCATTTTATTTTTTAAAACAGCTCTATTGAGGTATAATTGAGGTTAATGAAGTACACATAAAACCTGAATTTTGACACATATACACCTATGAGCCTTCACTGCAAGCAAGACAGTGAACATACTCATCGCCCCTGGATTTCCTGATTCTCCTTTGTTACCCCTCCCTCCCAACCCCAGTCCCCAGGTAACCACTGCCCTCCTTCGTGTCACAAAATATTAGTTTGCATTCTAGAATTTTCTAGAAAGGGAATCATACAGTATGTACTCTTGTTGCCTGGTTTGTTTCACTCAATAGTTATTCTGAGATTTATCCCAATTGTTGGGTGTATGGATAATTGTTTATCGTTGAGTAGTGCACTGTGTTTATGGGTGGATCACATTTTGTTTATTCATTCAGCTGTTGATGAGCGTTTGGGTTTTTCTGGTTTGGGGCTATTACAGACTGTACTTTTACGCTTGATGATAGTGTCCGATTGGCTTTGAGACCTATTGTTTCTTTAATCTCAGTGGGGGTGAGGGGTATATGATACTGTTTTCTGCATTTGCCAGGTAAGGAAACTGAAGCCCAGAGACTTATTACCAGAGTTGTTTTTGATTTTTAGTTGCTAACTCGTGTCCGATTCTTTCTGTGACCCCATGGACTATGGCCCACCAGGCTCCCCTGTCCACGGGATTTCCCAGGCAAGAATATTGGAGTGGGTTGCCATTTCCTTTTCCAGGGGATCTTCCCGACCCAGGGATCTAACCTGAGTCTCCTGCATTGGCAGGTGGGTTCTTTACCACTGAACCACCAAGGAAGCCCCTTATTGCCTGAAAGCACACAGTAAAAAGGTCAGAACTGAGGGAATCCTAATTGGAGACCAGGCTGCCCTGCCATTCAGGCAGCACAGTGGAAGGAAAGGCCATTTTGGTTCAGTGGTTAAGAGCACAGAGTGTGGAATCTGACTCCCTGGGTTCAAATCCCAGCTGGCTGGGGGACAAAGAGCTGCTGATTTAACCTGTCTCCCTGGTTTTCTTCACCTATAAATCCGGGATGTAGTAGTCGCCTACCATGTAGGGTTATTTTGAGGATTAGATGAATGAGTACATGTAAGGTCTCAGTCTCTTTCAGTAGGAGGTACTTATTATGAGTTGTCTATTGTTATTATTTGTTTCTCTCCCTCTCTCTCAAAGTCACTCAGTCACGTCTGACTTTGCGACCTCATGCACTGTAGCCCGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAGTACTGGAGTGGTTAGCCATTCCCTTCTCCAGGGGATCTTCCTGACCCAGGGATTGAACCCAGGTATCCTGCATTGCAGGCAGATTCTTTACTGTCTGAGCCATCAGGGAAACCATTATTCATTTATGGAATAGTTTTTGAGACCTACTCTGCTTTCTCTCACTGGGGCTGCATAACCCTTCACACTCCATGGTTTATTACTACCGCAGAGAGACTTTTTAGGGAGTGGGGACAACTCAGGCTTGGTCCCTGTGGCACTCATGGAGGGAGAAGGAGAAGGAGAAGGAGAGGTGAGGCAAAGTCCTGCTGCTTCGGGGCTGGGCTGGGCACGGGGGTAAGAAAGGGCAGCTCCGTGGTTTCAAGCCAGCTCTGGGTGACCCCAGCCAGCATGAGCCTGCCAAGGCCTGAGCTCTTCCCAGAACCAAAGGGAAGCCTACAAAACGCAAGCTCCCCCTCTCCACCCATCACAGGCTGTGCTGGGATGACAGGACTGTAATTACCCGTGGCAGGAGCTATTATTAGAAGGCAGATGTTACTTTAATTACGGTACTTAATAGAGGCTGAAAAATGGGAGGACCAGGTTGCTACAGAACTCTCTGGGTCTGGGGCTGTGTTTTCTTCACGCTGTGCTTCCCCAGGCCCTCACGTTCCAGAGGTATCCTGAGGCGGTGTTGGCATTCTAAGTGCCTGGGCAACTCCTGGTTACTCAAGGGTGAGTTCCCAGGCATTTGGGGATCTTGCCCCAGCTTCTCCCTCCTCAACACTGTCTCTGACCACCTGGTACTGCCTGAGTAGCCCTGGAGGTCTGCAGGGGCCCGGAAGAGAGCTGCTGCCCAGCCATGGAGCCTGGATTCTCCAGGCAGCTCTGGTGAAAGGCTGGAGGGCCAGAAGGCTTCTGTGGAGAAAAGCCTCACACATGTCTGCTATTGTTTTTTGATAAACAGTTTAATAAAGAACTAATGTTTGTTGAGCCCTAGGCAAAATGACATGTGCTTCCCCATTATACCATTTACTGTATTATTATTCCTGTTTCACAGACAAGGAAACTGATCTCAGAGAGGTTAACACACATACCTGAGGTCGCACAGTGTGAGTCAAAGAGCTAGGTCTGACTCCAAATTCCATTTTCTCTCCAGTATACTGTGGCTTCCAACTTTTTTGTTTTTTGGCAGTAGAAGCCTTTGTTCAAGTGAAATCTCACCCCAAACACTACAGATGGTAGCCATGCCCACTGCTGGGGCTGAAATGGGCCACAGCTGCCAGCTCGGGTCTGCTTCACGTTCTGTGGTGGCTTCTGAGGCAGCTGCACCCCTTTGGGGGGCACCCAGGACAGGGATTTGAAGACCTCTTGGGAAACGTGACGGATTCTGGAGGCCTCGTGGGATCTGCACAGAAAACCTAAGGCTTCTTTCTTGGTTTTACCCAGTTGGTCGCCCCTACAAGGTCTGGACTCAGGGAGAGGCTCTGATCCCCTGCCTGTGTCTGCTCCCGTGGCCTCGGGGTGGGGGGTGGGGGTGCTTCCCCTTTTCTGGTTGCTCTTTTGTCCAGTGGGGTCCTCTGCTCCCTGTGGAGCAGCAGCAAAAGGGAGAAGTATTTTGCAGGCACAGAGGAGGAAGGCGCGCCTTGCTTAATGCTCTGTTTGCCAGCAGCAGCCAGGAGCCAGGGCCTGGGGGAGGTGGAGGGGCGGGACGGCCACCCACAAAGCCAGCACGTTCACATCCTTTGCAGTGAGGTTGGGAGGACACTCGGCCTCCCCCAAGGCAACTGGGCCCCTCACCCAAGGACCTCATTGGAGATTGCTGAGGGCACGGCAGGCAGGCTTGCTACGTGGCAGTTAGAACCGGCCAGCCAGTCCACTCCCCCCCCCCACCACACACACACACACACACACACACACACACACACACACACACACACACACACCACACCACACACACACACACCACACCACACACACACACACACACACACACACCACACACACACACACCACACACACCACACCACACACACACACCACACCACACACACACCACACCACACACACACACACACCACACCACACCACACACACACACACACACACACACACACGCGCGCGCGCGCGCGCGCGCGCCATCCATTAAGGCAGAGCGCAGGCAGGCCTCCCAGGCTCCCTCCTTCCTCCAGGCCTGTGCTTCCAGGCTGATAAGTGGCTTTTGTGAAATGAGGCTGGAGGAGGGGCGGGGTGAGTGTTGGGGGGAAGGTTGTAATTAGAAGTCTAAACTGCTCCTCTATGACAGGGTCTCCTGTACATTTAGCTCTGTCTCTAGAGGCAGGAGAAGGAAAGTGGAGGAAGGCCTGGGCTTGTGGTCACACGCAGGGCCTTGGCGGAGACCTGGCCTGTCCCCCTTTCTGTAAGAGGCTGCCCTGGCCTCATGTGTGGCTCCCAGCCCCACTTTCCCTGACACCCAGGGGGCCAGCTCTCTGACCATCCCTCCATCCGCAGCAGAACTCACCATATGGGCAGCAGCAAAGCACAGCTGAGGGGTCAGCACACAGGGAGCAGCCTTAGCCTGAAAGCGCCCGCGGTCGGGAGTGGGGAGTGGCGCGTTTGTGTGTCCTGATCTCCGCAGTCCTCAGCCCTGCTTTTTAGCTAGTGCCTCAATCAGAAGGCCCAGGAGGGATTCAGCCAGCTCTCCCCAGGCTACACAGATTCTTAGCCTCTGGTCTTAGCCCCTTCTCAGACCTGGGCTCTTTCCACTCTGCTGTGTCCTCAAGAGGAGAACTGTGACCCCAAAACAGCATGGTGTAGGCTGGAGCAGCCACCGTCCCCCTTCAAAGATGAATCCTCTGGGCTGTGACGCAGTCATTTCTCTGGCTGTTGGGTCACTGTTTCCTTTCCTCGGAATCAAAAGAGCTCCCCAAATCCTGGAACTTCTATTTAACGCATCATAAATAAAATGCTACTAACGAATGGCTAAGATTTAAGATTGGAGAAAGACGGAAAAATGTTTATGATAGATCATCACATGAAAAAGGGAGGAAACAGAATTACACTTAGGGTGTCATTAAAAATGTCCTCTTCCACCCCACAAAGGGCTCTATATATAGATAGTGTGGAAGAAAATATTTTGATTGGAATGACTCCGAGTGATTTTTCCTCACTTTTATCTTTAAAAAATTCTTCTTAGTGAACATAATTGTAAAATAAGCAAACAAAAATGAGTGTTCTTCCAGTCTTGGCCACAGCAGCTGCAGAGAGACGTACAGTGTGGAGAAAGGAAATCCACCCAGGGAAATGTAAGAAACCTCCTTACTCCTCCTTTCCCAGGAAGCTGACTGATGTTAGTAGAGCCTGAACCTACTTCTGGAAGGCAAAACATGTGATTTCCCAGCACTCCATCACACTTCATCACACTGCCTGTGAATGAAGCTGATGCTGTTTTCTTCGTGCCAGTTTTATAAATGAGGACAATGAGGCTTGGAGAAGTTGGGTAACCAGCCCAAGCCAATAGCAAGCCAGGGCTGGATCGCGTTGCTCCTATTTCACCCTGACTGCTGTCTGGACCCCAGGGGCCTCCCTCCACCTTCCTAAACTGCCTACCTGTCCATCCCCCATCCTTCTGCAG
Seq C2 exon
GGGTGGAGTTCGTGGTGCCCAGGACCGGCTTTTATTGCAAGCTGTGTGGGCTGTTCTACACGAGTGAAGAGATGGCGAAGATGAGCCACTGTCGCAGCGCCGTCCATTACCGGAACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023891:ENSBTAT00000046225:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]