RnoINT0125077 @ rn6
Intron Retention
Gene
ENSRNOG00000014705 | Rbm20
Description
RNA binding motif protein 20 [Source:RGD Symbol;Acc:1307427]
Coordinates
chr1:274575057-274580930:+
Coord C1 exon
chr1:274575057-274575188
Coord A exon
chr1:274575189-274580808
Coord C2 exon
chr1:274580809-274580930
Length
5620 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
TTCCCTCCACCCTTCCCCAGGAG
3' ss Score
10.11
Exon sequences
Seq C1 exon
AAAACTCCAGGTACACGGAGACGAGATCTCTGAACTCGAGATCACCAGAATTCACCGAAGCGGAGCTGAAAGAGCCCCTTTCTTTGCCTTCCTGGGAACCAGAGGTGTTCAGTGAACTTAGCATTCCTCTAG
Seq A exon
GTATGTGAAATCCACAGTCCTTCCTGAATTTCAGCTCCAGGAAATGACAGTTCTAACGCAGTATGGAGGAGCTCAAGAGGGCCTCCTCCGTTGTGTTGCTTTTGCTTTTAAGGCGTGACGCACAAGCCCAGATCTGCAGGATGGTCAGGATGCTTGTGGCTCCAGGCACCAGGTGACAGAGCCATGAACGGCACGGTAGTAAGATTCTGCCAGGCAAGACTTGTTTCCCTGTCAGGGAGTGTTTGAGTCTTGACCATGCAGAGACTTTAAGCCCAGGCCTTGCTCAGGCAGGAAAGCAGAAGCCCAGGCACCTCCAGATTGTCGACTAAAATGAACCCCCTCTCTGCCATCTTCCCACGTGTCCTTGTCCCAGAACAACGCCACATGACTCTTATCCTTGACAGAGCAGCGAGAGCTGCTGAATAGAGGGTACGGGGAAGAGACCCAAGCCCTTGTCCTTCTGCTCAGCGATGCTCTTGCACCTTCAGACAAGTCTTGCCTTCCTGAGCCCCAGCCTCCCCATCAACAGCAGGGGCTGAAGCAGCAGTAGGTATCGGGGTGGTGCACTAGTAAGAACTTCCTAGACCACGACCCGAGCTCTGCCCTGACTGAAAGACTCAGGGCTAAAGAGATGAAGGAGGAGCCGCTACTCAGAGGGGACACGTGGGGAAGCTTGGGGAACCGATGAACCCCTTCGTCACCCAGGGAAGACCTTGCCAGCCATGGTTCCATTACCTTTCTTCTATCTCTTTACTCTCGGTATGCCATTGCATAGAATTAGATTTGAAACATGACAAATCTTGCTTTAAAAAGTTGCTGAGTAGTATCTCTCAAACAAAATTTATGTGCACGAGCATGTGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATGCACACACACACACACACACACACACATATGAGTGCGGGTAGGCATGTGTACTCATGCATGTGATACGGAGTCTGGAGGGCTATCAGATGGACCCTCCTTTGTCTTCCCCACCTTATTCCCTTGAGACAGGCATATACAACTTCACTGGCAAGTCAGCTCCTGGGATCCGCCCCTCTCTGTCCTTCAATGCTGAGGTTTTGGGAACGTGCAGCTAGCTATGCCTGGCCTTTTACTAGAGTGTCAGGGATTAGAACTCCAGTCAGTATGCTTATGCTGTAAGCACTCGGGCATAGGGGTCCAGCTCTGGTTCTCTCAATGCAAACTCTTAAAGATGACAGACAGACCTTAGAGTGAATCCTGGTGCTCTCAGACACTCTTACTCTGCACTCAGAGGTTGCAGAACCTGCCTTTCAGAGGCTTCAGCTCAGCCATTAGCACTCACTGGATCACGTGATGCTGCTCCCTGTACCCTGAGGGATCCAAGAGTCTAGAAAGTCTCAAGCAGGAACTGGGAATCGAATGACACAGCAGAAATTGAGAGTGTTTCCCTATTAAACATGTCTTCTCATTGTTATGTTTCACTCTACAAAACTTATTATAGCAAATTAAAAATAAGAGACCAAATAAAAAAGTCAACATTGATGGTCTTAACTGTCCCTCCCCAGCCTCAGAGGTGGCTGCTGCCATGTTCCCAGACGATTTTCTCCTGTACACGTTGCTTGTTTCTTCCAGTGGTAGATCGTAGGGATCACTCCGTGTCGGTACACCTAGTGCACACTCTTTTGAACTACTCCATCTGACTCACAGTTGCTGATTCTTTACTGGTGAGCACTTGGGTAGTTTCCTGTTTGTCTGTTTCTCTATTATGAACATGCAGTGACAGCTAAGCTGGTATCTTGTTGTCACTGCCCTGTGTTTGCTTTGTATGCATTATTGAGCACTCCCCAAACACTGAAGAAATGGGCGATGTTTTAAATTTCCCCTTTACAGGTAAGAAATCTAGGATGCGGTAACAAACCTCCTGGTCTGGAAGGGCTGATACAGGATTCAAATTCTAGGGGCGTACCTTAGTCTCTGTTCTGCTGCAGTCCACATCCCGTGGTTTGGTTCTCTTCAAGCACCTGCCAGAGTCCCGGGAGATGGGATGCTAGCCAATCATGGGTGCATTGTGGGGCCATATTTGCATCGAGAATGTTATAATTGCTACTAAATTACACTCCAAAAGGAGGGTAACAGCTTACAGTGCCAACTCCAGGGAGAATTCCCATCCTTTATCTCTTCACCAAATCCAGATAGCAGTCTCTAATCTCTATCAAGCCGTTAGGAAGAAAATAGTATCTGATTTTGTTTTTGTAAAGAGCCAGATTACGGTGTAATTGGCGTACAACAAAGGTCCCATATTTAGAGAGCGTGGTTTGCTCAGTTTGGACGTATACGTATGTCTATGCCGCTTTATGGATTTAGATATACCACATTCTGTTTGTCTGCCTGGTGATGGACACTGAAGATGTTGCTAGCTTGGACCATTATACATCATCTTCATTTAGTCTAGAAAGCTGATAGCTTATTGTGCTCCAACCTCCTACCCCCACCCCCAGGAACGGATGCTACCGTTTCTGTGCTAGACAGGTGAACAGGCTTTTGAGCCTTTCTCAAGATCGTCCACCAAGTTCTGGAACTTGGGGTGTCTGTTCTCTATCCATGCTGCCATCTGCCCTTGGCTCCGGCACAGTAAAGGCCATTTCGGTGCTGAAGAGCACAGACTGTGTGTTCTTGGGTTCAAATCCCATCTCTGCCACTTGATGGCTGGATGATGGATGAGTAGCAACTTATTTGGCCATTTTGCTTTAAGCTCTTTGACTATAGGAACCCAGTAAAAGAATCCTCTGTGTAGACTAATTTCGAGGAGGAAATGAATTAACGTCTCGAAGCTTTCCAGTAGCAGAAGCTTAGGGATGGCTGACAGGTTGTTGGGAATTACCCTTTTTCAAGGTCCACCATGCTTCTTCTCACTGGGGCTGCAAACCCTTTACACCCCAGAACTGGTCACTACTACAAAGAGACTTCCAGAAACACGAGAGACAACATCCAGGTCCCTGTGGAGAGCACAGAGGTGAAAGACAGGATGCCAAGGACAGGGCATCCCGTGGGAGAATTGAGAGGTCGGTCTTGTCACGGCCTGGGGTGTTCGTGGCTGGAGAAGGGCATTGCCTGTGTGATTCAGGCCAGCGCCAGCCAGCGTGAGCCTGCCAAGGCCTGCTCTTACTATAACCAAATAGCATCGCTGGCAAAAAGTGAGCTTTCCCCCTCTCTCCAACACAGGCTTTACTAGGATGACGGAGTCATAATTACCCATGCCAGGAGCTATTATTAGGAGGCAAATGCAGCTTTAATGACAGTACTTAATAAGACCCGAAGGAACGGAGGACTCGGTGGCTCCTGGTCTCACCACAGCTACAGGAGTGATCCATGGGTGCTGCCACTCTCTGGTCCTCACATTTCAGGCTTGCCGAGAGTGTGGTAGCAGGCCCTGTGGTGCCCTCTCAACCCCTGGGCTGTACCGTGGCCTGAGAATCCTCCTGCCTCCACTCAGCTCTCTCTAATGTTATGCTGTCTTTTGATTACTGATATTGACCTAACCCACTGGGCAGGGCCTGGGAAGAAAGTCACTGCCAAACCATGGAAACGTTTCTCCGAGCAGCCTTGGGAAAGCAAGGCTGGAGGGTGGATGAAGACCAATGTCCGGGTGCTTGGTTCCTGTGTTCCTAAATTCATGCTTTCTGAGCACCAGATGAAGTGACAGGTGCTTCCTCAGAACACCACATGGCAGTGTCCTCCCTAATCTGCAGACGAGAAAACGCATTTCAGAGCAGTTCAACAAACACCTCTGAGGGCACAGCTTAAATAAGGGTGGAAGGCCTGTCTGGCCCCAAGCGCCATTTCACCCCGCTATTACTGCTGCTTCTTGGCTTTACTTTGGTGGTGTGGTGGGAGACTTTACTCAAGTGAGAGCTCATGCCAACCCTATATTTGGTAGCTGTAACTCTCTAGTCGAAAGGAGCCATGGCTGCTCAATTTGGCTCCTGCCTCAGCCTCCATGGACTCCCCTGAGGTGGTTATACTCTTTCTGGGAACCACAGAACAGGGTGAGGAGAACCTGGTTGATACTAGAATCCTCGGCGCTCTGTTCCCGGTACAGCCCAGCTGCACCCCGCCGCCCATAGGGTCTGGGACAGGATGGGAGGCTGGGCTCTGACTGAAGTTCTTTCCCAATACATCTGAGGCTCCTGGGGCGGAACAGTGAGCACACAACTATTTTGCAACAACAACAGAAGAAGGAGATCGTGGGTCTCGCTCGATGCCCATTTCCCAGCAACAGCCTCGAACTTCCTCCCCATCCCATAAGCTCCCCTCCCCCTCAGGCCGGGCCACGTGTCCACCCTCTGCACACAGAGGGTGAAGGAGAAGGACATCCAGCCTCTCGGGGCAGCTGAACCAAGCGACACTTTCTCACTCCTGGGGATTGCTACTGAATGCCAAGGAGTTTGCAGACAGCAGGCTGACAGCTGCATGGCTTAGAGGCAGCCCGGGTCCCAGGCTGCAGTGTGGAGTTCTGCACTAGCAGGCTGCAAGCCGTTCCCTGTCCTCCCTCAGAGCTGCCCATTCACATTTACATTTACCATCATCGTTATCATTGTCATCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACTACCACCATCATCAGTTATCACTGAGATGTAAAGGAAAGTTCTGTTTACAAAATTAGGATCTCCCGTGTGGTGAGCACGAGTGGAGAAAGAACTGGGGCTGGGCTGTGGTTAGGAGACTATCTCAGGGCCCTGAGGAATGGGTACCTCATCGCAGTCAATCTGGTTTCCCAGATTGTCCCAGCAGAGGAAATGGGAGCAGCACCCTCTGCCCCCAGCTGCTGCGTTCTTGAAGACTTCCATCAAGGGTGTAGAACCTGAGTGCCCTAGGCTTAGCTCTTCTGGTGACACATGTAGCCCAGTTCCTGGGAGGGAGGCAGAGGCAGGTGCATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGCAAGTTCAGGACAGATAGATGATAAGGCCACAAAGTAAGACCCAGTCTCAAACACAACAACAAAAGCTGCCCCCCAAAGTCCTGCATATCAACAAATCACGTGGAAAGACGTGTTTACGTTAGAGCGAATGGGTGAACTTTCCTCTTACTCTTATTTTAATAAAAACAATTCTAAAAACCAACGCAAAATATAGAGAATTTTTCTATAACTGACCACAAATGCAGAGAGGGGAATCTGGCAGAAGTGAAATCCTTGGGAAAGAAACCTCCCCTCCGCTGCCTCCTCCCAGGTAGACTGATGGACCCACACGTGAAAGGCAGGGCCTCAGCGCATAATTGCTGAGTACCCTCCCTGCTGCTTGTGGCGCTCCCTGACACTCACAGCCACCTGTGAATGGAGTAGGCGCTGTCTCTCTCCAGCCTTGTTGTAAATGTGGTGAGGATTGGAGGAGTTGCTCACCACCAGAGTCAACAGAGAAAGAGGAGGGCGGGCGGGCGGGCGGGGCAGTGGAAGGGGGCGGGGTCCACGGGGCCTCCTACTACCTTCCTAACGCTGTCCTTCCCTCCACCCTTCCCCAG
Seq C2 exon
GAGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTACTGCAAGCTGTGTGGCCTGTTCTACACAAGCGAGGAGGCGGCCAAAGTGAGCCACTGCCGCAGCACTGTACACTACAGGAACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014705:ENSRNOT00000054685:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]