DreINT0138320 @ danRer10
Intron Retention
Gene
ENSDARG00000092881 | si:ch211-223c9.2
Description
si:ch211-223c9.2 [Source:ZFIN;Acc:ZDB-GENE-050208-365]
Coordinates
chr22:29751401-29753026:-
Coord C1 exon
chr22:29752919-29753026
Coord A exon
chr22:29751523-29752918
Coord C2 exon
chr22:29751401-29751522
Length
1396 bp
Sequences
Splice sites
5' ss Seq
TAGGTACAC
5' ss Score
4.06
3' ss Seq
TTATTTTGTTGTTTTGGCAGGTG
3' ss Score
9.19
Exon sequences
Seq C1 exon
ATATTCCTGACTCATTATCGGCTGCTTCACCTCAGGCATCAGACATCTCGGCTGCGTCGCCCTCTCAGGAGCAGGAGAAGGCCATCAGTGAACACAGCATACCATTAG
Seq A exon
GTACACCCACCATGACTCCACACAGACTTTATTTATTTGAATTGAGAAGATTCAATAGCTGTTAATCACTATCTCGGGACTGTATGGATCACTGACAGATGACAGTTGAAAGACGGGGGTTTCATGCTCCTTTTACAATGCTACATAAACCAAGAGAGCGTCCGAAACAACTACTGTACAATGTCCTTCACCATTTTAGCTGAATTGGTCAAATGATTAAAAATTTGTCATTGTTTTCGAAAGCCACTGGCTGTGTCCGAAATCGCCTACTACTCATGTATGCACTACATTTGAATTTACTACACGACCATTAGACAAGTTTGTTCTATATAGTATGAATGCGAGTAGTATAAACAGATCCGCCATTAGTGGTTATCATGTGATCTACCTGCGTCAGTTGCATTGCTTTACCTAAGCATATCCACTGCTGTATGGATATCCATTCTATTAAACAGACAAAAAAATAAATAAATACAGATTTAACATCCACAAACCGGGATTGAAGCGTCTTCTTTTATAACTGTACTGACATGTGGCTGTGGGGATGAAGTAAAGATTATAAACATGCATTGTTTTAAAAATGTTGCGAATTTGTAAAACTCATTCTTGATCACATTTGATGACGATTGATGATCACAGAGAGCTGAACAGATCTTTTAATCTCAGTTGCTCTGTGCACTGTCATACATATGATTATAAGTGTTATTACGAAGACATGTTATTATGCAGCTGTCAATCAATTAGGTGGGTGAGGAAACCGCACTCCCACGTCACCTTGTAAGGGGCCTAGAAATGGGAGGGATTTGGATCCTGTTTTAACGTCAGGAAATTTAAAAACAGAGACTTATTGTGGACCTATAAAACCAATATGACTGTGGACAAACTATATATACACACAGTTCTGTCAAAACATTTTCATAATAGGTGCCCTTTAACTATTAAGTCTCAAAAAACTCAAGAATTGTGTTGCTTCAGCTTATTTAAACCATATTAGTTTGAACAAGCACCAAAAGTATTTTTTGAGTGTAGTGTGAATGGAGTATCAGCTGAAATTTCTTCAAACGTTGAACAAAACTGTGCATTTCAGAGCACTTTGAGGATCTTGTAACAAGCGGAGGCTTCTGATCAGCTCTGCTGTGGGCTCTCAGTGGGGAACTGAAGCCTTTAAGGCCGGTTGATGTCAGTAGAGCATTTGTCATCCTGTTGAGTGAGGTGTGAATTGCACCCTCGAGGCCTGAGCTTGTGTACTCATTACCACACCGCTAACACACTTCATTCCTCCACAGAAGAGCTGCATTTACACCCCTGCACACACTTAGATGCAGAGATCAATGTGTGGAGGTGGCGGTAGGGGGTATTTTTTGACTTACGTTTGTTTATTTTGTTGTTTTGGCAG
Seq C2 exon
GTGTGGAGTTCATCGTGCCGAGGACGGGGTTTTATTGTAACCTTTGTGGCTTGTTTTACACCAGCGAACAAACTGCCAAGACGTCGCACTGCCGGAGTACAATTCACTACAGGAACCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000092881:ENSDART00000125017:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTCCTGACTCATTATCGGCTGC
R:
CTGTAGGTTCCTGTAGTGAATTGT
Band lengths:
230-1626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]