HsaINT0138373 @ hg38
Intron Retention
Gene
ENSG00000203867 | RBM20
Description
RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
Coordinates
chr10:110823480-110831182:+
Coord C1 exon
chr10:110823480-110823614
Coord A exon
chr10:110823615-110831060
Coord C2 exon
chr10:110831061-110831182
Length
7446 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TATCCCCCATCCTTTCCCAGGGG
3' ss Score
10.1
Exon sequences
Seq C1 exon
AAAACTCCAGGTACGTGGAAATGAAATCTCTGGAGGTGAGGTCACCAGAGTACACTGAAGTGGAACTGAAACAGCCCCTTTCTTTGCCCTCTTGGGAACCAGAGGATGTGTTCAGTGAACTTAGCATTCCTCTAG
Seq A exon
GTAAGCAAAACACACAGTCTTTCCTGAAATTCAGGTCTAGGAAATAACAGTTCCATAGCAACCTCAAGAGCTTGAGAGAGCTTTTTGGCATTTTGTTGTTGACATCGTTTTTTGTTCTTTTGAGACAAGGTCTCACTCTGTCACCCAGGCTGCAGTGCAGTGGCATGATCTCAGCTCACTGCAGCCTCAAATTCCTGGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGAAACTTGGACAACAGGTACACACCACCAGGCCCGGCTAATTTTTTTAATTTTTTTTTTTTTTGCAGAGATGGGGTCTCCATATGTGGCCCAGGCTGGTCTTCACCTCCTGGGCTTAAGTGATCCTCCTGCCTCAGCTTCCCAAAGTGCTGGGACTACAGGTGTGAGCCACTTCACCTGGCCGGCCTATCGTTATTTTAAGTGTATGATGCAATAACCTAGATTTGCAAGGGGCGGCTGTAAACTTTCTTGCAATTTCAGTCTCCCGTAATAGACCAGATACTCCGTGAAAACAGCCTTGAATAACAGTGCCCTGGGACCCAGAACTAAGAAGTCCTGTTTTTCCTGTCAGGGAATGCTTTATTCTTGATGACATGGAGTCTTTAAGCCTAGCCTTTATTCAGGCAGGAAAGCAGATGCCCAGCAGCCTCCATAAAGTCAACAAAAATGAACTTCGTCTGCTATTGTTCATTGCTCCAGTCCTTCCCAGAACAATGCTACATATTTTTTTCTCTTTAAAGGACCAACTTTTCTGAGGCAATGATGCTGAATAGAATGTGTTTGGGGCAGACTACCCCTAGTTCATAGAAAGGGTATTGAACAGGGAGACCTGGGTTTCTGTTCTTCCTACTTATGGGTGACTGTGTGCCCTCAGGTAAGTCATACCCCTTCTTGAGCCTTAGTTTCCTCTCTGTAATTTAGACAGCGATTTTTTCAATGGTGGAAGTGTTGGGAATGAAGTGGGGAGGGAGTTTACTGATGGAATCACCTAGGAATGAATCCCTTTTCAAAGAGAAGAGTTAAGCAGAGTCTCAGGGTAGGGAGTGAAGGCACTTTAAGAAAGTTCCCTGGGAGATTCTGACACAACCACTAACCCAGCAACTCCAGCCTACATCATCTTTGAGTCCCCTCGCATTAGCTCTGAAAGGTCGGAATTAGATAAAGTAGTAGTAGCAGCTGCTCAGAAGGAGAGCTCAGGAAAGTGTCACCTGGGAAAGTGTCACAAGGAAGCATAAAAAGCACGGGTCATCTGATGCCTGATGACCACGTGTCTGATCATGCAGGGAGGGGCTGGTCAGTGTGGAGGCTCGTCCTTTCCATCCAACTTGCTCTTTTTTTCCCTTCTCCTTTAAAAAAATCTCTTACTATTTCTTTCCTCCAGGTGTACCATTTTTATAGTCAGATCTGGAGAGCAAACTTCCTTTTTTTTTTAAGGGATAAATTTGCTGCACAGCATCTCCCAAGACAAAAACATAAGAAAGAAGGAAAAAGAAATACTAACTTTAGAATAAACTGAGATGACCCTGGGTATTTTAGCTCTAGAAAACAGTTGCAAAGGCCACCCTGCAGGAGAAGAGAGGGCTCCTTCATGCATTCAGTCAGTCAGCAAATACTTACTGGATAACATGGTACTGTGCTAGACACTCTGGGGTAACCAAGAAATATAACGCAAGTCTCTTGTCATCCAAGAACTTGGAACCTAATTGATACTAGCAAAAATTAAGAATAAATTCTGCTACCTTGTAATTTGTGTTTTACTACTGTTTTTCATTATAGAAAGTGTGAAAGATTATTGTAACAAATTCAAAAAATAAGAACCATATCAAGTCAATATTAAAGGTCTGATTGATCTCTTCCCTCCAGTCTCTCCCCAGTCTCCAGAGGTAGCCTACCACTGTCATGCCCAGTTTTTCTCTCACAAAAATGGGATCACACTACACACATAATGTTCTGCAAGTTCACTTAGTAGCAGGTCTTAGACATTTCTTCATGTCAGTACATAGAGAACACATTCTTTTTAACCACTGCAAATATTCCATCGTAAAAGCTATGCTATAAATGACTGATCTTTCCTCTGCTGGTGAACAGTTAGGCTGTCTGCTCTTTTTCCCATTTTAATAGCTAAGCTTTTATTGTTAACATTCCCCATGCAGGCACCATCCCTAGGGATCTGTATGTATTATCACATTTAACCCTCTCAAAACACCTATGAGGTAGGTGCTGTTTTTATCCTTATTTAACAGATAAAAAATCTGAAATGCAGAGTCACACAGCTAATAACTGGCAAAAACCAGAGTCAGGTTCAAATCCCAGTCATCTGACTCTAGAGCCATGTTCTTAGCTTCTGTTCTCTGCTGCCTTTCAGATGTGCTTGTTCAGTGGTATGTGTATGCCAGTGTTCCTGTGGGAGAGCGTCCTAGCCAGGGGGTTGTAGGGTGGTATGTATTTGCATTTTAAATTTTCATAATTGCTACTAAATTGCACTCCAAAAAGATGGTATCAGTTTTCCCTGCGACCTTGAGTGAGAGTTCCCAATATCCACCTCCCATTGGATTTTATCAGTTTTTAATCTTTCCTAACCAGTTAGGAAGAAAATAGTATCTCACCTTTTTAAAATTGGCTCTATTGAGTTATAATGGATATAAAGTAAGTGCATATCAAGTGCATAGTTTGATCAGTTTTGACCTATAAATATACCTGTGAGACCATCACCACAATCAAGACTGGGAACAATGTTCATCATATCCCAAATTTCCTGTCTCCTATGTAACCCCTCCCTCCCCACAGTGCAACCCCCAGGTAAAGGATCTCCTTTCTGTCACTAAATATTAGTTTGCATTTTCTAGAGTTTTATATAAAGGGAATCATATTGTATGTGCTAGTTTGGCTTCTTTTGCTCAACATCATTGAGATTCATCTGTACTGTTGGGTGGATCAGTAGTCTGTTTCATTCTTCTTCTTTTTTTTTTTTTTTTGAGACAAAGTTTTTCTCTCGTTACCCAGGCGGGAGTACAGTGGCATGATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGATTACAGGCACCTGCCACCACGCCTGGCTAGTTTTTGGTCTTTTTTTAGTAGAGATAAGGTTCCACCATGTTGGCCTTGAACTGTTGGGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCGTGCCCGGCCAGTCTGTTTCTTTTTATTGTTGAGGAGTATTGCGTTGCATATATGGATACATCACATTCTGTTTATTTATTCATCTGTTGACAAATATTTGGGTTGTTTTCAGTTCGGGGCCTTTACAGATTGTATTTGTTAATAGTCTTCAGTTAGCTTTGAGATTCATTATCTCATTGGTCCCCGAAGGAAGAGTATGGTATGAGGTTCTGCATTTGACAGGTGAGGAAACTGAAGTCCAGAGACTTACCCAGGATGACATAGCAAACGCAGGTTAGAACTCAGGATTTCTCAGCCTGGGCAACATAGGGAGACCCTGTCTCTGCAAAAAAATAAAATAAAATAAAACTAGCCAGGAGTTGTGGTGTAAATCTGCAGTCCCAGCTACTTGGGAGGCTGAGGGAGGAGGATTGCTTGAACCTGGGAGGAGATCCAGGCTGCAGTGAGCCATTATTGTGCCACTGCACTCCAGCCTGGGCAGCAGAGTGAGTGAGACCCTGTCTCAGAAAAAAAGGAAAAGAAACAAAAAAAAAAACTCAGGATTTCCGATCTCAGATCACTCTGTTCTCCAGGTTCTTCCAGTTCAGGCAGCAACACAGTGTAGGAAAGGCTACATTTGTGCAGAAACTATGAACACAGTCTGTGGAATCTGATTCCCTGAGTTTAAATCCCCTGTCTACTACCTACTGGCTGGATGACAAAGAGCAACTTATTTAACCTCTGCTTGGATTTCTTCATCTGTGAATCAGCCATAGTAATAGGAGGCTACTACGCAGAGTTATTTCGAGGATTAAGTGAACAAATACTGGTAAGGTCTTAGTGGCTTCCAGTGGGAGGTACTTAATAAGGGTTGTCTATTATTATTATTCACTCATGAAATATTTAAGACCTATTATGGCTCCTCTCACCGGGGCTGCATAACCCTTTAGCCTGCAGGACTGGTCACTACTGGCATGGAGACTTCTAGGGAGGTGAGAGACAATTTTTTGGCTTTGTCCCATGGAAAGCATAGAGCTGAAATAAGGGATGTCAAGGACTGGGCTCCCAGATGGGAGGAAAGGGAGGCCAGTCGCGTTGCTCGGGGACTGGGGGTGGGCATGGCTGGGGAAGTACACTGCACTCTGCACTTGAGATCCAGGCCAGTTCTGCATGACCCTGGCCAGCGCGAGCCTGCCAAGGCTTGCTCTCAGTAGAAACAAACAGCATCGCCTGCAAAGTGCAAGCTCCCTCCTCTATCCATCCCAGCTTTACTAGGATGACAGAGTTATAATTACCCGTGCCATGAGCTGTTATTAGAAGCCAAATGCAGCTTTAGTGATCCTAGTAGAGGCTGAAAAATGGAGGACTGAGTGGCTCCAGAACACATCAGGGCCGGGGCAATATGTCTTGATGCTGCCTCTTCATGTCCCCGTCACATTCCAGAAGTGTCCTGAGTTGTGCCATGGGATATGTGGTGTCTGCAGCAACCCCCATTTATTCTGGGACAAGTTACCAGCTCTTGGGGTTTCTCCTCCCCCAGGCTTCTCTCCCCCTAGTGCTGCCTGGTAGCTGCCTGGTACTGCCTGAACTTGCAGAGCAGGGGCCAGGGAAGAAAGTTGCCACCAAACTGTGGAGCCGGGTTCCCCAGGTGGCCTTGGGGAGAGGTTGGGGTTCAAGTGAGAAAGCCAACATTTAGGCAGTTATTAACAGCTTCTGTGATGAAATATTTAACACGTGTCTCCAAACCAGTATTTTTGAGCAACAGGCAAAATGATAGGTGATTCCCCTAAACATCACTTACAGCACTATTATTCCTATTTCACAGATGAGGAAACTAATCTCAGAGAGGGTAAACAGTGTGCCTGAGGTCACACAGCATAAGTAAAAGAGTTGGGTTTGCCTCTACATTCTATTTTCTCTCCATGACACTGTGGCTTCCAAGGTTTTTTTTTGTTTGTTTGCTTTTTGTTTTTTGTTTGTTTGTTTGTTTTTTTGACAGTAGAAGTCTTTGTTCAAGTGAAATCGGTTCCAGAACTGACAGAAGATAGCTCTAGCTACACTGCTGGGGGCTTTGGCTACCAGCTCAATCCCTGCTTCAGGGTCTGTGGTAGCTCCTAGGGCATCTGTACCCCTTCTGGGGATCCCAGGACAGGGACTCAGAGGACTCAACAGGGGGCTTAATAAAAACCCCAGGGCTTCTTTCCTGGTACCACCCAGCTGGTTCATCCTCCAGAGGCTGGGACGGGACTGAGAGTGTGGCTCTGATCAAAGCTCTCCTTTTTTCCCAGCTGCCCCTCTCCTATACTGCGGGGGTCTCGGCTCCCTGCAGAGCAGCAGCAGAGGGAAAACTATTTTGTAACAACGCAGGAAGGAGGCAGACCTTGCTGAATGCGCCTCTGCCAGCACCAACAGCCAGGAGCCAGGACCTGTTTGTGAGGTGGAGGGGAGAACTGGCCCCCACAGCCCAAGCTGGGGCCACTTTTCCATCCTTTGCAGAGAGGAAGGGAAGGACACTCAACCTCCCTCCGGGCACCTGGGCCTGAGTGAGGCCCTCTCACTTCTGGGGACCACTGCTGAGGGCATGGCGTGTAGCCTGCAATGTGGCAGTTAGAGAAAGCCAGACTGAGGAGGACGCCTCAGGCCCCGGACCACAGCCCCACTGTCAGTCCAGGCAGGCCTCCTGGGCTCCCTCCTTCCCTCCCATCTCCCTCCCTCAGAGCTGCCCTTCACACTGATAAGTGGCTATTTTGAAATGAAAAAAAAGTTCTAATGACAAGTCTAGGCTGCTTCCTTCTGACAGGGTCTCCTAGGCACTTAGCTCAGTGTCCTGGGAGGTGGGAGGAGGAAAGTGAAGCCACCCAACCAGCTGGGCTTGCAGTCGGTCACGCTGTGCCTTGGAGCAGGCGCTGTCATGAGTGGAGACCTTGCCTGTCCCCATCCCTGCAAGAAATTGCTGTTCCCCTGCCTGTGCCATTCCCAGGCCCCTTCCTTCCTTCTACCCAGGATGGCCAGACCTGAAACCATTGCCCAGCCCCAGCAGAAGAGAGGCTTGCCCCGCAGCCTGCAAGTGGGATTGGGTGTTCCAAGCATCACCCCTCTTTCTTAGTTCCCTGATGGGTCCTGCTTCTCACAGCCCTCACACCCTGCCCTTTGGCTGGCGCTGCACAGTCAGGTGCCTGGTAAACAGGGCATGTGTTCCTACCTCCATTCTCAGGTGAGGAAACTGAGCCCCAGGAGCAGTTCGGCTGACTCTCCCCGGGTCACATGGGTTCTTAGCATCTGGCCTGGACCCTCTCAGAGCTGGGCTCTTTCCACTCCACTGACTGACCGTGTCTTCAAAAGGAGAACTGTGACCTGCAAAACACCTTCGTGGAGGCTGGAGCAGCCACCATCCCTTCAAGGATGACTCCCCTGGCTGTGACATTGTCACTCCTCTCTGGCGGTGGTGCCAGTTGTTTCCTTTGCTTGGAATCAAAAGGCCTCCCAGAATTCTGGGACTTATATTTAATAAATCACAAATGAAATGCTAATTGATGGTTCGGATGTAAAGACTAGAGGAAGTGGGAAAATGTTAATGATATACAATTTCACGAAAAAAAGAGGACAGAGAATTGTAATTAGGGTATGACTAAAATGGCCCCCCCAAAAGAGGCCTACATATAGGTTAATTATGTGGAAGAAAATATTTGGATTGGAGTGACTCTGGGTGATTTTTTCCTTCCTTTTATTTACTTTTTTTTCTGTAAAGAACATAATTCTAAAATAAACAAACAAAAACGAGAGAATTCTTCGAGAGTCCCGGTCACAGCAGCTGCAGAGAGAGGTACAGTGTGAAGAAATGAAATCCAACAAGTGAAATATCAGAAATGTCAGAAATCACCTTCATTGTTCTTGGAAGGAGGCTGATAGTAGGAGAACAGGCCAGCGGCAGGCCATGGAATGGCTAAGTGCTTACCACACCGCCGAGTCCATCCCTTACATTCACAACAACCTGTGAATGAAGTGGGTGTGAGTCTCTTTGTGACTGTTCTGCAAGTGAGGAAACTGAGGCTTGGAGAAGCTCAGTAACCAGCCAAGGTCAACAGCAAGTGAGGGGTGGAGCTCGTGGCTCCCATTTCTACCTGATGGCTGCCAGGACACAGGGGCCTGCCTCCCATGCCATCCTAACCCTGCGTGTCTATCCCCCATCCTTTCCCAG
Seq C2 exon
GGGTGGAGTTCGTGGTTCCCAGGACTGGCTTTTATTGCAAGCTGTGTGGGCTGTTCTACACGAGCGAGGAGACAGCAAAGATGAGCCACTGCCGCAGCGCTGTCCACTACAGGAACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203867:ENST00000369519:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.272 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development