GgaINT0042134 @ galGal3
Intron Retention
Description
NA
Coordinates
chr6:27579704-27580971:+
Coord C1 exon
chr6:27579704-27579823
Coord A exon
chr6:27579824-27580849
Coord C2 exon
chr6:27580850-27580971
Length
1026 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGT
5' ss Score
7.7
3' ss Seq
AATGCAGCATTTCTTAATAGGTG
3' ss Score
4.31
Exon sequences
Seq C1 exon
CAAATTCTAGGTACCTGGAAATGAGATCTCTCGAATACCCAGAAGTAGAGTCTAGGAGGAGGAACTCTCCGGCAGGCTGGGAACAAGAAGACGTCTTCACCGAGCTCAGCATTCCCCTGG
Seq A exon
GTACGTTGGGACATTCAGGCCGAGGGTGGCCGAGATGCTTCCCACTGCAATTCCTAGAACTTACAACAAGATGTCACTTTAAGGCTACTTGCTCTATTTATTTCTCAGAACAGATGTGAGGAGAGTGAAGGAGCAGCGTATAGGACAGAAGGGGAGCTGCTGAAAGAAACAAGCTTTTCATTGTAGACCTTTGCTGATTTCTTTCCAGATGAATAGCAAAAGATGTTAAATGTCACTGATGAAATCAGTTCCCTTGGGCTTCTTTGTCTCAGACCTGAGCCTGATGCAAGGAATCTCTGCACTAATCAGAAAGAAGAGCAAACTAGCATGGTTTAGCCTTGTGTACCTCCCACAGGCACAGTGCATTCAAGGGACCTGGCGAGGCTGTGATAGAAACTCTGATCAAAGTCAAGAGATCTTGAGGGCAAAAAGATCATCCAGGAAATTCTCTAGGAATTAAAGAGCTGAACTGTTAAGACATATGGTATGAAAAATACTTAGTAATTTTGAAAAATGCCTGTCATAAAAGTGGTGATTATACTCTCAGTATTACAAAAAGTATTTGCTTTACTGTGTAAACACTGATCATAAGTAAGACACTTGGGAGAATGCATCTTTTAAGAGTAATTTGCATGACGTCAGTGTGAATTTGCTGCTAATAACTACTATAGCTGTTCTGGCCCTTGAGGTTACACAGTGAGATTTCTACCCAATATTCTGTGAGAAGAAGGTCCGTGTGTATGATATCTATGAGAGAAGTGCAAGGTGCATTTGCAATGCACAGGATTTTATACTGCAGCTCAGGCTTCAAAGCCAGGCTGGATGGGGCCATGGGCACCTGATCCTGGTGGTTGGCTGCCCTGCCCATGGCACAGTGTTGGAGTTTGATGATATCTAAGATAGCTTCCAACCTACGCCATTCTATGAATCCAGGATCAGTCTTCATATCTATGTCATTTAACTAGCTTATCTTGGAGGGGAAGGTTTACAACTGACATGTGAAGGTAATGCAGCATTTCTTAATAG
Seq C2 exon
GTGTGGAATTCGTGGTGCCTAGAACTGGGTTTTACTGCAAGCTCTGTGGACTTTTCTACACAAATGAAGAGACGGCAAAGACAAATCACTGCAGAAGTACTGTCCACTACAAAAATCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023527:ENSGALT00000039061:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF049887=AKAP95=FE(30.1=100)
A:
NA
C2:
PF049887=AKAP95=FE(30.1=100),PF121713=zf-C2H2_jaz=WD(100=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAGGTACCTGGAAATGAGATCT
R:
CTGAAGATTTTTGTAGTGGACAGT
Band lengths:
238-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]