BtaINT0123380 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006168 | RBM45
Description
Bos taurus RNA binding motif protein 45 (RBM45), mRNA. [Source:RefSeq mRNA;Acc:NM_001130753]
Coordinates
chr2:18767822-18770248:-
Coord C1 exon
chr2:18770122-18770248
Coord A exon
chr2:18767945-18770121
Coord C2 exon
chr2:18767822-18767944
Length
2177 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
3' ss Seq
TCATAGATTGTCTTTTTCAGGTT
3' ss Score
9.52
Exon sequences
Seq C1 exon
GTGTTTGGAGATATCGAGTATTGCAGCATTATTAAGAATAAAGTAACTGGAGAAAGTAAAGGCTTGGGCTATGTTCGGTACTTAAAACCATCACAAGCTGCCCAAGCAATAGAAAACTGTGATCGAA
Seq A exon
GTAAGGATGTGTTCATTTATCATTGTTATTTGAAAAAGTGCTAATCTGATTATCTTAATAGTGGTTTGTGCTAATAGCCATACCTGCTAATTTAATCTCAGCAATGGTAATTTAAATATATATAGTCTTAGGATGAAAATAATTTGGGGGTTATTATTAAGCATTCACTGAGGCACTGTCTTGAAAAATATGAGCAACTGCATTAACTCATTAAGTGAAAATGCTCGTTTCATTAGTATTTCCACAGGGTTTTAGGGTTTATTCAATTATTTTAGAATTTTAGGTATTAAAAACATTGACCAACCCTTTCAGGTTGGGTTGTTTGTTTGTTTTTTTTATATTTATTCTTTGTATTTTAAAGAAATTCAAGTAGTCTGTAATATTTGTTCATGTATGACTTAAACCCTAAATAGAAGTAAGTATACTAATAAACATATAATTAATAAAGATAGGATTTTTAAGGTTTGCTAACTTTGGAAAGTAAATGCACATTGGGTTAATTTCAAGCTAGAGTGGCATTACTGTTACTGGTGTACATTCTGAAGAATGAGAATTTTAGAGACCAAGGAAAATATTCTTTGTTGTCATACTTGTAATTATATTGAGCTTTAGAAATGAGATGTAGAATATTTATTTCAGTTAGTGGGTTTCAGGATATTATAAAATTCATACATACTGGAAATAATTATTGTTAATCAGAACGTTTAGATAATTCTAAGTTACATACCAAAATGTTCTCTCACATCCTTCTAAATTTATCAGTCAGCCAGCATTAATTGAGTACCTATGGTATACTCATCAATATAATTAGAGGGATACAACTGGAATTTATATAGCATCCCTGACATTTAAGGAATTTATAGCTATAAATTTAATACCCATAAATTAAAATTTATAGCTATAAATTATCTTGGATAGCCAAGATCTAATAGGCAAAAAATAGTTGAAGAGTAATAGGATTTTTTTAAGCTCTTTGAAAGCAAGGTATATGTCTTATTTATCAGTTTCTGTCACCCCAAGTACCTAGTACTATACTCGGCATAGTAGTGAGCCCTCAGTTAAGACTTTGAGATCCCTAGCAAAGATTTTGTCATTTAGAGTAGTCTCAATGAAAATATGGCAAATGAAAAAGTGTTCAAACGTGTGTGATATTGCCTGTCAGTGGTGAAAAGTAAGTGCACCGGTGCAGCGTGAAAATACATCTGGAGTAGACTTTGCACCTGGTGTAGAGGAGCCAGGGCAGATGATGAGAGCAATGTCAGTAAGACGTGGCATATCTAGAAATGAATATCTTTGCCTAATAGTGTGAAGGCAACAATCTGAGTAAACCTTGTTATTCCCATTGAGAAAGTAATCTAGGTACATTTGGACCATATACGGGAGGTTATGAAAAGTTCAAGCTTAGTCCACATTAGAATTTCCCTTGAAGATTGCTTCAAGAGAAGAAAAATAGCAAAAACTGTTTCAGGATCTTTGATCTAAACACAGTATCAAGAGTGAATTTCCAGAGAAAGAATTCAAAGAGGCTGGTTTTATCCTTTTTGGAGCCACTAAATAATATGGTGAAAGCTGTGAACCTTCTCCCTTTGAAATACGCCCTAGTGCACATACACACAAGCTCATTTTTGGACACCTAGTTAAAACTCTTAACCCAGAGGCAAATGGATCAGTTGAAGGATTGTTGTAATTAATTGAAGAAAATATAATTTTAAAACAGAGGCAGGGAAATTGGAGTAAAATGTAGCATCCTCTAGGTACATTTCAAAGGAAGAATCTTGATGGCAGTTGGGTGTGAAGAAGCACTGTTAGATTTTGATGTTGAGAAGGCTGAGAGAATGAATGATGATGTCATCTGTAGTAGGGATTGATTGATCAATGTAATGAATGACTATGATTGATGTCATCTGTAGTAGGGATGGATTGATTGATTGGAAAGGATAGCATAGAATCGTGATCTTTCATGTCTCTATTGACCCATAATTTGGGATTCTTGCTATTTCTCATTTACTCTTTTCTATCTTTCAAAAAACAAAAAAATACGTAGGTCTGGTGGAGATGGTTGTTGGTATAGATTTTTTATACAATTATAAAACTAAATCAAGCAGTAGCAGTCGAGTATATTTGTAAGTGTGTTAAATTTGCTATAAAGTTTGAAATTCATAGATTGTCTTTTTCAG
Seq C2 exon
GTTATAGAGCAATCTTGGCTGAACCTAAAAACAAAGCATCTGAATCCTCAGAACAAGATTATTACAGTAATATGAGGCAGGAGACTTTAGGACATGAACCTAGGGTAAATATGTTTTCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006168:ENSBTAT00000008111:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.357
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
NA
C2:
PF0007617=RRM_1=PD(2.7=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]