RnoINT0125232 @ rn6
Intron Retention
Gene
ENSRNOG00000010595 | Rbm45
Description
RNA binding motif protein 45 [Source:RGD Symbol;Acc:628862]
Coordinates
chr3:63225088-63227437:+
Coord C1 exon
chr3:63225088-63225214
Coord A exon
chr3:63225215-63227314
Coord C2 exon
chr3:63227315-63227437
Length
2100 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
TCATGGATTCTCATTTTCAGGTT
3' ss Score
10
Exon sequences
Seq C1 exon
GTGTATGGAGACATCGAGTACTGCAGCGTTATTAAGAATAAAGTCACTGGAGAAAGTAAAGGCTTGGGCTACGTGCGGTACTTAAAACCATCACAAGCTGCCCAGGCAATAGAAAACTGTGATAGAA
Seq A exon
GTAAGAATGGGCTTCTAAAGCTTTATTTTGTGTGTACGGTGGTTGTGCCTACCTGTACGTCTGTGTGCCATCTGGGCGCTGTGCCAGAGGAGGACGTCAGAGCCACGGGAACTGGAGTTGCAGATGGGTGTGGATATTGGGAATAGAACCCAGGTCCTCTGTAAGAGCCACGAGTGTTGGTAACCACTGGACCATCCTTCCAGCCCCAAAATGTATTTTGTTTTGTTTTGTTTTCAACCTTGCTAGAAGACCTTTGAAAAGAAATTCTCATTATTATAAATAACAGCCTTCTAGTAGATTCTTGCCACGCTATATTAACTAGTGTAGCGGGTATAAAACATTTTGCACTGATGAATCAGTCACGCACTGATGCCATCTTGAGAAATATGACCAACTGAGTACTCGATGGTAAGCACACGACACTCCTGGTTTACTGTTTGCATAGGGTTGGGGCTTTAAAAAATGTTTTGTACACAGAGTCTTGCTGTGTAGGCCAGACTGGACTTTAACTTGTCATTCTCCTGGCTTGGCCTCCTAGGTGTCTTTATAGGTGGACGCCACCATGCCCAACAAGTCTTACCCTTTCTCTTTGTTCCTGCCTGACCTAAGCCCTAACAAGGATTTAATATACTAACAAACATGCAAATCGGATGGAGTGGGTGAGATTTGCTGTCACGGGTAAATGATTTGAAGGCATAGTCACTAATTATTGGACATTTTGATGCTGTATATAAAGCTGACTTCAGGAAATAAAGAGGTGTACTAAATTATTGGGCTTTAGACTGTTATAAAAATCTATCTATACAGGAAAGAGTTGCTGTTGATCAGAATTTCCCACTGTCCACACCATGATTTTCTTCAAACTTCTCCGTCAGTCCTAATTGGCTTCCTACAGTGTGACCCTCAGTATACTAAGGGGGAAATATAAATGCAGTACCTGGTAGCACTGGCACCTAAATTTCTATATCTGTATTGAGTATCGAAGAGCTAGAAGATAAGCAGTAGAAGAGTATTTTTAGACTGAAAACAAAAAGTACATCTTGTTTTCCCTCACCTCCAAATCCCATAAAGTCATAGCTCCTCCACACAGAGGAGTGAACTCAAACCTACTGGCTTACTATATCTGCAACTGTAATAATAGGAACACTGTGAACCCTTGAAGTAGACCGCTGTACTCATAAGATGGGTAAGCATTTGTTTTAGAGGGTTCGTGGGACCTTCCCACCTTGTGTAGGGGTTTGGAGAGAGTGCACGTGGAAGCCTAGTTTACACACTTTGTTTTGGAAGGTTTCTTCATGAACCTGGAGCTCACCAGTTGGCTAGCCTGGCCTCCTGTCTATCTCGACAACACTGTAATTGCTGGCATTTATGGCCTCACCTGGCTTTCTATGTGGGTGTGGGGATCTGCACAGATCTCCATGCTTGCACGGCTAGCATTTGCCTAGCTTAACTGTCTCTCCATAATCCTCTTCCCACTTTTTGAAATGGATCTTTAGACCCCTAAGTAAGAGCCCTTGATCTAGAACAAGGAAAATGGTTACAGAGTTGTATTGAACTGGAGATGTAATTTAAAAACAGTCAGAGAAGTTAGCATGCAGGGTAGCATGCTAAGCACATATAAAGGAAGCATTGTAGTAGGTTAAAAATGAGGATGGCCGGGGTTGGGGATTTAGCTCAGTGATAGAGTGCTTGCCTAGGAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCCAAAAAAAAGACCAAAAAAAAAAAAAAAAAAAAATGAGGATGGCCAATGGGTTTTGATGCTAAGCCAACAAGGCAAATGGGTGACACCACCTTTTGGAAGGCTGGCACCGCACTGCTGACCTTTCTTGTCCATGTCAATCTCTACTTGGGGCTCTTGATTTTTTTGTTGTTGTTTTTTGCTTTGTTTTGTTTGTTTGTTTTCTCATATACTTTTTGTCCTTTAACCACGAAACAAGTCAGTCTGATGGGGACAGCCACCGCGTAAATCCTGCGTTGTACAGTTACATTTTTAAAACTAGGTCAGATCCACAAAATCAAATATGTGAAGCTTGCCGTGAAGCTTAAAAATTCATGGATTCTCATTTTCAG
Seq C2 exon
GTTTCAGAGCACTCTTGGCTGAACCTAAAAATAAAGTGTTGGAGTCCCCAGAACAAGATTATTACAGTAGCGTGAGGCAGGAGACTTTGGGGCACGAGCCTAGAGGAAATCTGTTTCCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010595:ENSRNOT00000042968:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.155
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
NA
C2:
PF0007617=RRM_1=PD(2.7=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]