HsaINT0138576 @ hg19
Intron Retention
Gene
ENSG00000155636 | RBM45
Description
RNA binding motif protein 45 [Source:HGNC Symbol;Acc:24468]
Coordinates
chr2:178982782-178985136:+
Coord C1 exon
chr2:178982782-178982908
Coord A exon
chr2:178982909-178985013
Coord C2 exon
chr2:178985014-178985136
Length
2105 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
3' ss Seq
AATTCATGGGGTTTTTTCAGGTT
3' ss Score
6.84
Exon sequences
Seq C1 exon
GTGTATGGAGATATCGAGTATTGCAGCATTATTAAGAATAAAGTGACTGGAGAAAGTAAAGGTTTGGGCTACGTACGATACTTAAAACCATCACAAGCTGCCCAAGCAATAGAAAACTGTGATCGAA
Seq A exon
GTAAGGATGTGTTTAACATTGTTAAAAACTTTTGTAAAAAATTCTGATTATTCTAAATAGCTGAATTTAATATTAGTTTTTGCTAATAACTGTATCTGCTAATGTAATTTTAGCAGTGGGTATTTAAATATTTACAGTCCAAGGAAGAAAAATATTTTGGGGTTATGATTAAACATTCATTGAGGCACTATCTTGAAGAAATAAGAGCAACTACATTAACTTAGTAAGTGAAATGCATACTTTGGGTATTATTTTTATAGGTTTTTAGGGTTTTTTAAGTGTATTTTAGAATTTTAAGTATTAAAAACTTGACTTACCTTTTCAAGGTTTTTAAAATATTCTTTATATTTGTTTATATTTGATCTACATCCCAAAGACTATAAAGTATAACTAATAAACCTATAGGTTAAGGGTAAGATTTATAAGATGTGCTAACATAGGTAACTGATATAGATAGGGTTAATTTCAAGCTAGAGTGACATGAATGTGATCTTCTGATGTTGCTGTATATATAAAGAATAAGAATTTTAAAGATGTCAAAGAGAATATTCTTTGTTGGTATACTTCTAGTTAGGTATATTGACCTTTAGAAATGATATGTAGAGTAATTAAATTACTGGATTTTAGGACATTATAAAAATATATACTTACTGGAAAGAATTACTGTTAATCAGTAGAATTCTTAGATACCCCTAAGGTACATACCCAGATTTTCTCTTAGATCCTTCTAAATTTCTCATTTAGCTAGCAGTAATTGAGTACCTGCAGTATACTGATCAATATGCTAAGTAGAGGGATACAGATGAAGTATATGGCAGCCCTCACATTTAAGGAATTTATAGCTGTATTGGGTAGCCAAGATCTAATAGGCAAAAAATAAAGAATAATGGAAGAACTTTTTTTAAAGGCTCTTTGAAAGCAAGAAGTATGCCTTATTTGTCTGTCACTCCAGGTATCTAGTACAATAATAGGCCCTCAATAAAGATTTATTAAGCTCTCTATAAAAGTAAATGCCATTTATAGTAGACTCAGTAAGAATTTGCCAAATGAAAAAAATGTTCATAAGTGTATGGTAGAGTCTGTCAATGGTGAAAAACAAGTGCTGGATGAGCATGGCAACACATGCCGAGGGGGTAGGACTTGTGTCTGGTGTCGAGGAGGCAGGACAGAAGGTGAGAGCAGTGCTAGCAGAGGCACAATGCCAGGAATAAACATGTGTTTTGCTTGGTGCTGTGAAGGCAGCTGTCTGAGTAAAGCACAGTATTTCTGCTGAGACATTCTGAGACACAGTTAACTAGGTACATTGGAACATGGGAACCATATATTGGAGGTTAGGAAAAGTTCAAGGTTAGTCCGCATTAGGATTCCTTTGTAGATTGTTTAGAAAGACAAAAGTAAGAACAGTTGATCTAACCCCACTGTATTAATGATAGATTTCCAGAGAAGAATTCAAACTGGCTGGTTTTATCCTTTTTTTAAGCCACTGAATAATGTGAAGAAAACTGAACCCTTGAAATATGCCCATGTGCACATAAATGCATAATAAGCATTTTGTTTGAAGTGTCAGAGGGTTTGTGGAATCTTCCCACCTTTTGAAGCTCATCCTTGGACCCCTAGTTAAGAACCCTTGATCCAGAAGCAAAAAAAACAGTTAAAGGGCTCTTGTAATTAATTGAAGAGAATCTAAATTAAAAACAGAGGCAGGGAAGTTAGAGTAAAAGATAGCATATTCCAATTGTGTGCATTTCAAAGGAAGAAACTTGGTGACAGGTTAAATATAAAGAAGCCCTACAGGATTTTAATGTTGAGGAGCTTAGGTGAATGAATGACGATGTTATCTGTAATAGGGGGAGATGGGAAAGGATAGCATAGAATTGCTGATCTTTCATGTCTACATTGACCCGTAATTTGGGATACTTGCTGTTTGTCATTTACTCTTTGCCATCTTCCAGAAAGCAAAGAAGTAGGTCTGGAGGAGATGGCCATTGTATAGATTTTGCTTTGTACAATTATATTTATAAAGCTGAGTCAGGCACTAGCAATCAAGTATATTTGCAGGTATGTTAAATTTGCTGTGAAACTTGAAATTCATGGGGTTTTTTCAG
Seq C2 exon
GTTTTAGAGCAATCTTGGCTGAACCTAAAAATAAAGCATCTGAATCCTCTGAACAAGATTATTATAGTAATATGAGGCAAGAAGCTTTGGGACATGAACCTAGAGTAAATATGTTTCCATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155636-RBM45:NM_152945:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(56.8=100)
A:
NA
C2:
PF0007617=RRM_1=PD(2.7=4.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)